Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub / pablorr24 / metagenomics_snakemake
Snakemake-based pipeline for metagenomics classification. Currently support short-reads Illumina Sequences and long-reads ONT Sequences.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pablorr24%2Fmetagenomics_snakemake
Stars: 0
Forks: 0
Open Issues: 0
License: None
Language: Python
Repo Size: 107 KB
Dependencies:
168
Created: 29 days ago
Updated: 11 days ago
Last pushed: 11 days ago
Last synced: 10 days ago
Topics: metagenomics, pipeline
Files
Loading...
Readme
Loading...
Dependencies
environment.yml
conda
- _libgcc_mutex 0.1
- _openmp_mutex 4.5
- aioeasywebdav 2.4.0
- aiohttp 3.9.0
- aiosignal 1.2.0
- amply 0.1.6
- appdirs 1.4.4
- attmap 0.13.2
- attrs 23.1.0
- bcrypt 3.2.0
- boto3 1.29.1
- botocore 1.32.1
- brotli-python 1.0.9
- bzip2 1.0.8
- c-ares 1.21.0
- ca-certificates 2023.08.22
- cachetools 4.2.2
- certifi 2023.11.17
- cffi 1.16.0
- charset-normalizer 2.0.4
- coin-or-cbc 2.10.10
- coin-or-cgl 0.60.7
- coin-or-clp 1.17.8
- coin-or-osi 0.108.8
- coin-or-utils 2.11.9
- coincbc 2.10.10
- configargparse 1.4
- connection_pool 0.0.3
- cryptography 41.0.7
- datrie 0.8.2
- defusedxml 0.7.1
- docutils 0.18.1
- dpath 2.1.6
- dropbox 11.36.1
- eido 0.2.2
- fastqc 0.11.8
- filechunkio 1.8
- frozenlist 1.4.0
- ftputil 5.0.4
- gdbm 1.18
- gitdb 4.0.7
- gitpython 3.1.37
- google-api-core 2.10.1
- google-api-python-client 2.108.0
- google-auth 2.22.0
- google-auth-httplib2 0.1.1
- google-cloud-core 2.3.2
- google-cloud-storage 2.6.0
- google-crc32c 1.5.0
- google-resumable-media 2.4.0
- googleapis-common-protos 1.56.4
- grpcio 1.59.3
- httplib2 0.22.0
- humanfriendly 10.0
- idna 3.4
- iniconfig 1.1.1
- jinja2 3.1.2
- jmespath 1.0.1
- jsonschema 4.19.2
- jsonschema-specifications 2023.7.1
- jupyter_core 5.5.0
- krona 2.7
- ld_impl_linux-64 2.38
- libabseil 20230802.1
- libblas 3.9.0
- libcblas 3.9.0
- libcrc32c 1.1.2
- libexpat 2.5.0
- libffi 3.4.4
- libgcc-ng 13.2.0
- libgfortran-ng 13.2.0
- libgfortran5 13.2.0
- libgomp 13.2.0
- libgrpc 1.59.3
- liblapack 3.9.0
- liblapacke 3.9.0
- libnsl 2.0.0
- libopenblas 0.3.24
- libprotobuf 4.24.4
- libre2-11 2023.06.02
- libsodium 1.0.18
- libsqlite 3.44.0
- libstdcxx-ng 13.2.0
- libuuid 2.38.1
- libzlib 1.2.13
- logmuse 0.2.6
- markdown-it-py 2.2.0
- markupsafe 2.1.1
- mdurl 0.1.0
- multidict 6.0.4
- nbformat 5.9.2
- ncurses 6.4
- numpy 1.26.0
- oauth2client 4.1.3
- openjdk 8.0.152
- openssl 3.1.4
- packaging 23.1
- pandas 2.1.3
- paramiko 2.8.1
- peppy 0.35.7
- perl 5.34.0
- perl-threaded 5.32.1
- pip 23.3.1
- plac 1.3.4
- platformdirs 3.10.0
- pluggy 1.0.0
- ply 3.11
- prettytable 3.5.0
- protobuf 4.24.4
- psutil 5.9.0
- pulp 2.7.0
- pyasn1 0.4.8
- pyasn1-modules 0.2.8
- pycparser 2.21
- pygments 2.15.1
- pynacl 1.5.0
- pyopenssl 23.2.0
- pyparsing 3.0.9
- pysftp 0.2.9
- pysocks 1.7.1
- pytest 7.4.0
- python 3.11.6
- python-dateutil 2.8.2
- python-fastjsonschema 2.16.2
- python-irodsclient 1.1.9
- python-tzdata 2023.3
- python_abi 3.11
- pytz 2023.3.post1
- pyyaml 6.0.1
- re2 2023.06.02
- readline 8.2
- referencing 0.30.2
- requests 2.31.0
- reretry 0.11.8
- rich 13.3.5
- rpds-py 0.10.6
- rsa 4.7.2
- s3transfer 0.7.0
- setuptools 68.0.0
- setuptools-scm 7.1.0
- six 1.16.0
- slacker 0.14.0
- smart_open 5.2.1
- smmap 4.0.0
- snakemake 7.32.4
- snakemake-minimal 7.32.4
- stone 3.3.1
- stopit 1.1.2
- tabulate 0.9.0
- throttler 1.2.2
- tk 8.6.13
- toposort 1.10
- traitlets 5.7.1
- trimmomatic 0.39
- typing-extensions 4.7.1
- typing_extensions 4.7.1
- tzdata 2023c
- ubiquerg 0.6.3
- uritemplate 4.1.1
- urllib3 1.26.18
- veracitools 0.1.3
- wcwidth 0.2.5
- wheel 0.41.2
- wrapt 1.14.1
- xz 5.4.5
- yaml 0.2.5
- yarl 1.9.3
- yte 1.5.1