computational-metabolomics/struct

R/Bioconductor package - STRUCT: STatistics in R Using Class Templates

Language: R - Size: 1.19 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 5 - Forks: 0

computational-metabolomics/msPurity

R-package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics

Language: HTML - Size: 12.8 MB - Last synced at: 3 days ago - Pushed at: 12 months ago - Stars: 16 - Forks: 4

computational-metabolomics/structToolbox

R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox

Language: R - Size: 30.4 MB - Last synced at: 3 days ago - Pushed at: 2 months ago - Stars: 10 - Forks: 4

computational-metabolomics/MetMashR

Language: R - Size: 18.9 MB - Last synced at: 5 days ago - Pushed at: 6 months ago - Stars: 2 - Forks: 0

computational-metabolomics/msp2db

Convert MSP files into a database

Language: Python - Size: 475 KB - Last synced at: 5 months ago - Pushed at: almost 4 years ago - Stars: 9 - Forks: 6

computational-metabolomics/beamspy

BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)

Language: Python - Size: 76.7 MB - Last synced at: 12 days ago - Pushed at: almost 2 years ago - Stars: 17 - Forks: 5

computational-metabolomics/mspurity-galaxy

Galaxy tools for msPurity package: includes precursor ion purity calculations and spectral matching

Language: R - Size: 83.1 MB - Last synced at: 5 months ago - Pushed at: 8 months ago - Stars: 3 - Forks: 6

computational-metabolomics/metabolomicsWorkbenchR

R/Bioconductor Package - Interface to the Metabolomics Workbench RESTful API

Language: R - Size: 5.03 MB - Last synced at: 6 months ago - Pushed at: 10 months ago - Stars: 9 - Forks: 1

computational-metabolomics/dimspy

Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data

Language: Python - Size: 107 MB - Last synced at: 21 days ago - Pushed at: almost 2 years ago - Stars: 19 - Forks: 9

computational-metabolomics/cfm-galaxy

Galaxy tool for applying Competitive Fragmentation Modeling (CFM)

Language: Python - Size: 1.9 MB - Last synced at: 6 months ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 2

computational-metabolomics/sirius-csifingerid-galaxy

Language: Python - Size: 503 KB - Last synced at: 5 months ago - Pushed at: 9 months ago - Stars: 3 - Forks: 4

computational-metabolomics/dmadb-docs

Size: 23 MB - Last synced at: 5 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

computational-metabolomics/django-mbrowse 📦

⚠️ 🚫 [DEPRECATED] see README for more details.

Language: Python - Size: 14.8 MB - Last synced at: 5 months ago - Pushed at: 12 months ago - Stars: 3 - Forks: 0

computational-metabolomics/django-misa 📦

⚠️ 🚫 [DEPRECATED] see README for more details.

Language: Python - Size: 125 KB - Last synced at: 5 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

computational-metabolomics/mogi-docs 📦

⚠️ 🚫 [DEPRECATED] see README for more details.

Language: HTML - Size: 27.2 MB - Last synced at: 5 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 1

computational-metabolomics/django-mogisite 📦

⚠️ 🚫 [DEPRECATED] see README for more details.

Language: CSS - Size: 2.03 MB - Last synced at: 5 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

computational-metabolomics/structReport

R/Bioconductor package - STRUCT report

Language: R - Size: 44.9 KB - Last synced at: 6 months ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

computational-metabolomics/metaboblend

Python package for de novo structural elucidation of small molecules in mass spectrometry-based Metabolomics

Language: C - Size: 10.6 MB - Last synced at: 6 months ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 1

computational-metabolomics/sbcms 📦

:warning: :no_entry_sign: [DEPRECATED] see README for more details.

Language: HTML - Size: 2.5 MB - Last synced at: 6 months ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 1

computational-metabolomics/django-mogi

Metabolomics Organisation with Galaxy and ISA

Language: Python - Size: 15.6 MB - Last synced at: 5 months ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 0

computational-metabolomics/metfrag-galaxy

Metfrag for Galaxy

Language: HTML - Size: 3.01 MB - Last synced at: 5 months ago - Pushed at: almost 5 years ago - Stars: 3 - Forks: 3

computational-metabolomics/beamspy-galaxy

Galaxy tools for BEAMSpy: Birmingham mEtabolite Annotation for Mass SpectroMetry (Python Package)

Language: Python - Size: 1.1 MB - Last synced at: 12 days ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 2

computational-metabolomics/pmp

R/Bioconductor package - Peak Matrix Processing and signal batch correction for metabolomics data sets

Language: R - Size: 3.7 MB - Last synced at: 6 months ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 1

computational-metabolomics/dimspy-galaxy

Galaxy tools for Python package DIMSpy: data processing of Direct-Infusion Mass Spectrometry-based metabolomics and lipidomics data

Size: 14.8 MB - Last synced at: 6 months ago - Pushed at: about 4 years ago - Stars: 4 - Forks: 4

computational-metabolomics/ptox-metadata-manager Fork of precisiontox/ptox-metadata-manager

The PrecisionTox Metadata Manager API

Size: 8.6 MB - Last synced at: 6 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

computational-metabolomics/staged-recipes Fork of conda-forge/staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

Size: 101 MB - Last synced at: 6 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

computational-metabolomics/django-gfiles

Simple file management in Django

Language: HTML - Size: 98.6 KB - Last synced at: 5 months ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

computational-metabolomics/django-galaxy

Galaxy interfacing with Django

Language: Python - Size: 32.5 MB - Last synced at: 5 months ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

computational-metabolomics/conda-computational-metabolomics

A collection of conda recipes and build workfow for the conda computational-metabolomics channel.

Language: Shell - Size: 23.4 KB - Last synced at: 4 days ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

computational-metabolomics/metabolabpy Fork of ludwigc/metabolabpy

NMR data processing

Size: 131 MB - Last synced at: 6 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

computational-metabolomics/amimspy

Python package for processing acoustic mist ionization mass spectrometry-based metabolomics and lipidomics data

Language: Python - Size: 6.32 MB - Last synced at: 12 days ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

computational-metabolomics/msp2db-galaxy

Galaxy tool for msp2db

Size: 114 KB - Last synced at: 5 months ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

computational-metabolomics/xlsxbuilder

xlsxbuilder

Language: R - Size: 51.8 KB - Last synced at: 6 months ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

computational-metabolomics/bioconda-recipes Fork of bioconda/bioconda-recipes

Conda recipes for the bioconda channel.

Size: 278 MB - Last synced at: 6 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

computational-metabolomics/msnpy-galaxy

Galaxy tools for Python package MSnPy: data-processing and annotating MSn-based metabolomics and lipidomics data"

Language: Shell - Size: 28.8 MB - Last synced at: 5 months ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

computational-metabolomics/STATegraData Fork of STATegraData/STATegraData

STATegra multiomics data and preprocessing pipelines

Size: 38 MB - Last synced at: 6 months ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

computational-metabolomics/galaxy Fork of galaxyproject/galaxy

Data intensive science for everyone.

Size: 474 MB - Last synced at: 6 months ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

computational-metabolomics/metexpy

MetExPy: Python package to search, extract and rename metabolite and lipid names using regular expression

Language: Python - Size: 33.2 KB - Last synced at: 6 months ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

computational-metabolomics/msnpy

Python package for processing and annotation of MSn fragmentation data

Language: Python - Size: 9.64 MB - Last synced at: 5 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1

computational-metabolomics/cliquems-galaxy

Size: 13.7 KB - Last synced at: 6 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

computational-metabolomics/deconrank

Package to deconvolute, rank & score precursor ions prior to fragmentation

Language: Python - Size: 604 KB - Last synced at: 5 months ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0

computational-metabolomics/dmatools-galaxy

General Galaxy tools developed for the DMA project

Language: HTML - Size: 5.92 MB - Last synced at: 6 months ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 0