cwieder/PathIntegrate

PathIntegrate Python package for pathway-based multi-omics data integration

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cwieder/py-ssPA

Single sample pathway analysis tools for omics data

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cwieder/AdventOfCode23

Repo for advent of code puzzles

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cwieder/PathIntegrate_scripts

Benchmarking and application scripts for PathIntegrate

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cwieder/metabolomics-ORA

Code for simulations in "Pathway analysis in metabolomics: Pitfalls and best practice for the use of Over-representation Analysis" Wieder C, Frainay C, Poupin N, Rodríguez-Mier P, Vinson F, et al. (2021) Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis. PLOS Computational Biology 17(9): e1009105.

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cwieder/sspa-in-metabolomics

Code for the manuscript "Performance evaluation and applicability of single-sample pathway analysis methods to metabolomics data".

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cwieder/met-pathway-tutorial

This repository contains the pathway analysis tutorial for the Imperial Hands-on Data Analysis for Metabolic Profiling course.

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cwieder/MBPLS Fork of DTUComputeStatisticsAndDataAnalysis/MBPLS

(Multiblock) Partial Least Squares Regression for Python

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cwieder/GSVA Fork of rcastelo/GSVA

Gene set variation analysis

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cwieder/GSEApy Fork of zqfang/GSEApy

Gene Set Enrichment Analysis in Python

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cwieder/cwieder

Config files for my GitHub profile.

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cwieder/chemometrics-tutorials Fork of IPTC-DataAnalysisCourse/chemometrics-tutorials

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cwieder/SymbNET_tutorial

Pathway analysis tutorial for SymbNET 23

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cwieder/cwieder.github.io

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