Ecosyste.ms: Repos
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GitHub / fhcrc 12 repositories
fhcrc/taxtastic
Create and maintain phylogenetic "reference packages" of biological sequences.
Language: Python - Size: 13.1 MB - Last synced: 22 days ago - Pushed: 22 days ago - Stars: 19 - Forks: 9
fhcrc/seqmagick
An imagemagick-like frontend to Biopython SeqIO
Language: Python - Size: 2.25 MB - Last synced: about 21 hours ago - Pushed: about 1 month ago - Stars: 108 - Forks: 22
fhcrc/biopy
Automatically exported from code.google.com/p/biopy
Language: Python - Size: 754 KB - Last synced: about 1 month ago - Pushed: about 9 years ago - Stars: 1 - Forks: 0
fhcrc/sekhon_fisher
Python implementation of Sekhon's Bayesian alternative to Fisher's exact test
Language: Python - Size: 133 KB - Last synced: about 1 month ago - Pushed: over 11 years ago - Stars: 2 - Forks: 0
fhcrc/yapp
Yet another pplacer pipeline
Language: Python - Size: 6.46 MB - Last synced: about 1 month ago - Pushed: 7 months ago - Stars: 0 - Forks: 0
fhcrc/prepdrm
Analysis pipeline for identifying low frequency drug resistance mutations (DRMs) in samples from the Partners PrEP study
Language: C - Size: 6.83 MB - Last synced: about 1 month ago - Pushed: almost 10 years ago - Stars: 0 - Forks: 0
fhcrc/mutgen
Generate mutations under a motif based mutation model
Language: Python - Size: 250 KB - Last synced: about 1 month ago - Pushed: almost 10 years ago - Stars: 2 - Forks: 0
fhcrc/ampliconnoise
A python front end for Chris Quince's AmpliconNoise c code
Language: C - Size: 1.76 MB - Last synced: about 1 month ago - Pushed: almost 9 years ago - Stars: 6 - Forks: 0
fhcrc/microbiome-demo
Demonstration files and scripts for our high-throughput sequencing analysis pipeline
Language: Shell - Size: 5.18 MB - Last synced: about 1 month ago - Pushed: about 10 years ago - Stars: 5 - Forks: 0
fhcrc/mcl
Graph clustering by flow simulation
Language: C - Size: 3.02 MB - Last synced: about 1 month ago - Pushed: almost 10 years ago - Stars: 6 - Forks: 0
fhcrc/deenurp
16S rRNA gene sequence curation and phylogenetic reference set creation
Language: Python - Size: 1.07 MB - Last synced: about 1 month ago - Pushed: 6 months ago - Stars: 4 - Forks: 3
fhcrc/nestly
Make and use nested directory trees corresponding to combinatorial choices of parameters
Language: Python - Size: 418 KB - Last synced: 8 days ago - Pushed: about 7 years ago - Stars: 21 - Forks: 2