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GitHub / fhcrc / deenurp
16S rRNA gene sequence curation and phylogenetic reference set creation
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fhcrc%2Fdeenurp
Stars: 4
Forks: 3
Open Issues: 23
License: gpl-3.0
Language: Python
Repo Size: 1.07 MB
Dependencies:
38
Created: over 11 years ago
Updated: about 2 years ago
Last pushed: 7 months ago
Last synced: about 2 months ago
Files
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Readme
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Dependencies
requirements.txt
pypi
- Cython ==0.29.28
- DendroPy ==4.5.2
- Jinja2 ==3.0.3
- MarkupSafe ==2.1.0
- PyYAML ==6.0
- SQLAlchemy ==1.4.32
- biopython ==1.79
- decorator ==5.1.1
- fastalite ==0.3
- greenlet ==1.1.2
- hdbscan ==0.8.28
- joblib ==1.1.0
- numpy ==1.22.2
- pandas ==1.4.1
- psycopg2-binary ==2.9.3
- pygtrie ==2.4.2
- python-dateutil ==2.8.2
- pytz ==2021.3
- scikit-learn ==1.0.2
- scipy ==1.8.0
- seqmagick ==0.8.4
- six ==1.16.0
- taxtastic ==0.9.2
- threadpoolctl ==3.1.0
setup.py
pypi
- docker/build-push-action v2 composite
- docker/login-action v1 composite
- docker/setup-buildx-action v1 composite
.github/workflows/tests.yml
actions
- actions/checkout v3 composite
Dockerfile
docker
- python 3.9 build