jr-leary7/scLANE

Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.

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jr-leary7/scLANE-Simulations

Simulation study for the scLANE manuscript

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jr-leary7/scLANE-Revision

code and data relating to the scLANE revision

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jr-leary7/quarto-site

My personal website

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jr-leary7/scLANE-Paper

analyses for the manuscript detailing `scLANE`

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jr-leary7/scLANE-Sims

Simulation studies for scLANE

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jr-leary7/SurveyQuantReg

This repo contains an R package built to analyze NHANES survey data using quantile regression.

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jr-leary7/StatisticalRethinking

Working through McElreath's book on Bayesian statistics with R, Statistical Rethinking.

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jr-leary7/SingleCell.jl

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jr-leary7/SCISSORS

SCISSORS builds upon the Louvain graph-based clustering in Seurat by optimizing parameter selection when reclustering cell groups, with an eye towards identifying rare cell types.

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jr-leary7/SCISSORS-Sims

Simulation study for SCISSORS

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jr-leary7/scanpy Fork of scverse/scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

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jr-leary7/PHC-6937-Project

My final project for PHC 6937 (Data Visualization) for my Biostatistics MS at UF.

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jr-leary7/SCISSORS-Analyses

Analyses relating to the Yeh Lab's `SCISSORS` project

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jr-leary7/r

Bioinformatics analyses, class projects, etc. Mostly RMarkdown documents.

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jr-leary7/PHC-6088-Project

My PHC 6088 project for my MS program at UF.

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jr-leary7/jr-leary7.github.io

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jr-leary7/python

My Python code. I used to hate Python, but recently I've been enjoying it more!

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jr-leary7/PHC-6063-Modeling

Machine learning models for diabetes diagnoses

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jr-leary7/awesome-single-cell Fork of seandavi/awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

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jr-leary7/jackknife

My personal R package

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jr-leary7/bash

Next generation sequencing pipelines that I've written.

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jr-leary7/cplusplus

C++ is misery, but in a good way

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jr-leary7/YehLabHTS

HTS Drug Discovery Analysis

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