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GitHub / jr-leary7 / scLANE
Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jr-leary7%2FscLANE
Stars: 7
Forks: 2
Open Issues: 16
License: mit
Language: R
Repo Size: 28.1 MB
Dependencies:
49
Created: over 2 years ago
Updated: about 1 month ago
Last pushed: about 1 month ago
Last synced: about 1 month ago
Topics: differential-expression, estimating-equations, genomics, mixed-models, pseudotime, rna-velocity, scrna-seq, single-cell, trajectory-inference, transcriptomics
Files
Dependencies
- actions/checkout v3 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- actions/checkout v3 composite
- actions/upload-artifact v3 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- glm2 * depends
- magrittr * depends
- MASS * imports
- Rcpp >= 1.0.7 imports
- RcppEigen * imports
- bigstatsr * imports
- broom * imports
- broom.mixed * imports
- doParallel * imports
- dplyr * imports
- foreach * imports
- gamlss * imports
- geeM * imports
- ggplot2 * imports
- glmmTMB * imports
- parallel * imports
- purrr * imports
- scales * imports
- splines * imports
- stats * imports
- tidyr * imports
- tidyselect * imports
- BiocGenerics * suggests
- BiocNeighbors * suggests
- SingleCellExperiment * suggests
- SummarizedExperiment * suggests
- bluster * suggests
- cluster * suggests
- clusterProfiler * suggests
- covr * suggests
- furrr * suggests
- future * suggests
- igraph * suggests
- irlba * suggests
- knitr * suggests
- msigdbr * suggests
- rlang * suggests
- rmarkdown * suggests
- slingshot * suggests
- testthat >= 3.0.0 suggests