GitHub topics: rna-velocity
aristoteleo/dynamo-release
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
Language: Python - Size: 25.8 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 471 - Forks: 62
aristoteleo/dynast-release
Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments
Language: Python - Size: 81.4 MB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 17 - Forks: 6
theislab/cellrank
CellRank: dynamics from multi-view single-cell data
Language: Python - Size: 95 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 393 - Forks: 50
kevinrue/velociraptor
Toolkit for Single-Cell Velocity
Language: R - Size: 26.5 MB - Last synced at: 7 days ago - Pushed at: 2 months ago - Stars: 58 - Forks: 9
TheJacksonLaboratory/STQ
Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images
Language: Nextflow - Size: 4.29 MB - Last synced at: about 1 month ago - Pushed at: 4 months ago - Stars: 20 - Forks: 3
huangyh09/brie-tutorials
Tutorials for using BRIE
Language: Jupyter Notebook - Size: 37.6 MB - Last synced at: 22 days ago - Pushed at: over 3 years ago - Stars: 8 - Forks: 0
jr-leary7/scLANE
Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.
Language: R - Size: 31.5 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 11 - Forks: 4
mcrewcow/Yizhen_microglia
collab | DFC
Language: Jupyter Notebook - Size: 4.85 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 1
pinellolab/pyrovelocity
š¯’«robabilistic modeling of RNA velocity ā¬±
Language: Python - Size: 25.7 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 47 - Forks: 5
calico/velodyn
Dynamical systems methods for RNA velocity analysis
Language: Python - Size: 832 KB - Last synced at: 18 days ago - Pushed at: over 4 years ago - Stars: 24 - Forks: 1
mcrewcow/RGC_Dnmt3a_pONC2d_paper
Retinal ganglion cells regeneration in 2 days post optic nerve crush retina | Lydia Tai | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
Language: R - Size: 97.7 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1
mcrewcow/ChaginLab
Growth Hormone effect on Cartilage Growth Plate; Light-Sheet Microscopy; Pseudocoloring | Projects I started and still working on in Andrei Chagin Lab | Karolinska Institutet
Language: Jupyter Notebook - Size: 23.9 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 1
theimagelab/entrain
Entrain: Predicting Environmental Regulators of Differentiation Trajectories
Language: R - Size: 63.9 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0
GuangyuWangLab2021/cellDancer
Predict RNA velocity through deep learning
Language: Jupyter Notebook - Size: 764 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 46 - Forks: 10
aron0093/cytopath
Simulation based inference of differentiation trajectories from RNA velocity fields.
Language: Python - Size: 220 KB - Last synced at: about 16 hours ago - Pushed at: about 2 years ago - Stars: 10 - Forks: 4
basilkhuder/Seurat-to-RNA-Velocity
A guide to using a Seurat object in conjunction with RNA Velocity
Size: 994 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 114 - Forks: 26
StatBiomed/SingleCell-Workshop-2021
Module 4 for HKU Single-cell Workshop
Language: HTML - Size: 13.8 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 11 - Forks: 13
mcrewcow/Pan_et_al_DFChen_IGFPL1_paper
IGFBPL1 Retinal Microglia Project | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
Language: Jupyter Notebook - Size: 21.1 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 1
mayurdoke6/Longitudinal-scRNAseq-of-human-pancreatic-slices
This repository contains coding scripts utilized for the analysis of Longitudinal scRNAseq of human pancreatic slices datasets
Language: R - Size: 18.6 MB - Last synced at: about 1 month ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
mcrewcow/Sun_Ye_microglia_macrophages_paper
Socs3/Spp1 Project on Microglia in OIR | Ye Sun Lab Collaboration Project | Boston Children's Hospital
Language: Jupyter Notebook - Size: 9.85 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1
hisplan/docker-velocyto
Dockerized Velocyto for RNA Velocity
Language: Dockerfile - Size: 5.86 KB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0
sqjin/nlvelo
R pacakge for RNA velocity estimation with nonlinear models
Language: R - Size: 2.42 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 2
hisplan/velopipe
RNA Velocity for SEQC
Language: wdl - Size: 267 KB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0