microbiome/outreach

Publications, slides, and posters

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microbiome/iSEEtree

extension of iSEE for TreeSE

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microbiome/miaViz

Microbiome Analysis Plotting and Visualization

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microbiome/mia

Microbiome analysis

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microbiome/microbiome

microbiome R package

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microbiome/data

Microbiome datasets of the mia ecosystem

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microbiome/qiime2R Fork of jbisanz/qiime2R

Import qiime2 artifacts to R

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microbiome/OMA

Orchestrating Microbiome Analysis

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microbiome/course_2023_bergen

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microbiome/seqtime Fork of hallucigenia-sparsa/seqtime

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microbiome/phyloseq Fork of joey711/phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

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microbiome/MicrobiomeExperiment Fork of FelixErnst/MicrobiomeExperiment 📦

Bioconductor defining a SummarizedExperiment class for microbiome data

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microbiome/scater Fork of alanocallaghan/scater

Clone of the Bioconductor repository for the scater package.

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microbiome/course_nijmegen2019

Educational material for the Nijmegen September 2019 course

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microbiome/NMGS

Neutral model

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microbiome/Tools-Microbiome-Analysis Fork of microsud/Tools-Microbiome-Analysis

A list of R environment based tools for microbiome data exploration, statistical analysis and visualization

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microbiome/philr Fork of jsilve24/philr

Phylogenetic Isometric Log Ratio

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microbiome/course_2022_FindingPheno

FindingPheno workshop

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microbiome/dada2 Fork of benjjneb/dada2

Accurate sample inference from amplicon data with single nucleotide resolution

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microbiome/RPA

Robust Probabilistic Averaging

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microbiome/course_2022_oulu

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microbiome/miacourse

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microbiome/examples

Example solutions to programming tasks

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microbiome/course_2022_turku

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microbiome/course_mia

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microbiome/course_2022_radboud Fork of microbiome/course_2022_oulu

Radboud summer school 2022

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microbiome/course_2022_miaverse

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microbiome/benchmarking

Benchmarking miaverse performance

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microbiome/miaSim

microbiome data simulation package

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microbiome/microbiomeDataSets

Experiment Hub based microbiome datasets

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microbiome/course_2021_radboud

Radboud Summer Course 7/2021 https://www.ru.nl/radboudsummerschool/courses/2021/brain-bacteria-behaviour/

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microbiome/miaTime

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microbiome/tutorials

Tutorials

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microbiome/ANCOMBC Fork of FrederickHuangLin/ANCOMBC

Differential abundance (DA) and correlation analyses for microbial absolute abundance data

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microbiome/course_2023_oulu

Oulu 2023 course

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microbiome/bluster Fork of LTLA/bluster

Clone of the Bioconductor repository for the bluster package.

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microbiome/microbiome.github.com

microbiome project - home page

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microbiome/course_2021_ml4microbiome

Course ML4microbiome

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microbiome/docker

Docker container/s for miaverse

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