opencobra/cobratoolbox

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

Language: MATLAB - Size: 1.02 GB - Last synced: about 4 hours ago - Pushed: about 5 hours ago - Stars: 237 - Forks: 302

opencobra/optlang

optlang - sympy based mathematical programming language

Language: Python - Size: 9.51 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 229 - Forks: 49

opencobra/COBRA.jl

High-level, high-performance, constraint-based reconstruction and analysis in Julia

Language: Julia - Size: 11.3 MB - Last synced: 12 days ago - Pushed: about 1 year ago - Stars: 58 - Forks: 31

opencobra/memote

memote – the genome-scale metabolic model test suite

Language: HTML - Size: 12.1 MB - Last synced: 13 days ago - Pushed: 4 months ago - Stars: 122 - Forks: 26

opencobra/cobrapy

COBRApy is a package for constraint-based modeling of metabolic networks.

Language: Python - Size: 60.6 MB - Last synced: 20 days ago - Pushed: 21 days ago - Stars: 442 - Forks: 212

opencobra/sphinx_cobra_theme Fork of martamatos/sphinx_cobra_theme

Language: HTML - Size: 727 KB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

opencobra/MASS-Toolbox

Mass Action Stoichiometric Simulation (MASS) Toolbox

Language: Mathematica - Size: 84.5 MB - Last synced: about 1 month ago - Pushed: over 6 years ago - Stars: 11 - Forks: 8

opencobra/pypi_cobrapy_travis

hosts binary wheel installers for unit testing

Language: C - Size: 179 MB - Last synced: about 1 month ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

opencobra/kb_memote Fork of janakagithub/kb_memote

Language: Python - Size: 48.2 MB - Last synced: about 1 month ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

opencobra/COBRA.models

Set of models used for testing COBRA code in continuous integration environments

Language: Julia - Size: 15.3 MB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

opencobra/jeweler

Test and grade genome-scale metabolic models (GEMs).

Language: Nextflow - Size: 2.16 MB - Last synced: about 1 month ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

opencobra/cobrapy-website

Language: HTML - Size: 2.81 MB - Last synced: about 1 month ago - Pushed: 6 months ago - Stars: 1 - Forks: 7

opencobra/cobrapy-bigg-client

Language: Python - Size: 462 KB - Last synced: about 1 month ago - Pushed: almost 6 years ago - Stars: 1 - Forks: 0

opencobra/COBRA.binary

Linux, Windows and Mac binaries maintained by the constraint-based reconstruction and analysis community

Language: MATLAB - Size: 171 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 1 - Forks: 6

opencobra/driven

Data-Driven Constraint-based analysis

Language: Python - Size: 672 KB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 12 - Forks: 9

opencobra/cobra-component-models

Provide SQLAlchemy ORM and pydantic data models for SQL storage and serialization of COBRA components such as reactions, compounds, and compartments.

Language: Python - Size: 262 KB - Last synced: 14 days ago - Pushed: over 2 years ago - Stars: 3 - Forks: 0

opencobra/swiglpk

Simple swig bindings for the GNU Linear Programming Kit

Language: Python - Size: 19 MB - Last synced: 19 days ago - Pushed: 28 days ago - Stars: 26 - Forks: 10

opencobra/ctf

Chemical table files for constraint-based modelling

Size: 4.64 GB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 3 - Forks: 4

opencobra/m_model_collection

A collection of M models downloaded from published studies

Language: Jupyter Notebook - Size: 12.8 MB - Last synced: about 1 month ago - Pushed: about 8 years ago - Stars: 14 - Forks: 15

opencobra/COBRA.tutorials

Repository of tutorials for The COBRA Toolbox

Language: MATLAB - Size: 298 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 18 - Forks: 45

opencobra/MASSef

Language: Mathematica - Size: 191 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 0 - Forks: 1

opencobra/COBRA.papers

Repository for scripts related to reproducing the results of an individual publication

Language: MATLAB - Size: 385 MB - Last synced: 12 days ago - Pushed: 6 months ago - Stars: 8 - Forks: 12

opencobra/memote-webservice 📦

Run memote in a microservice with a frontend that allows you to upload and test models.

Language: Python - Size: 129 KB - Last synced: 14 days ago - Pushed: over 5 years ago - Stars: 0 - Forks: 3

opencobra/Medusa

Analysis of ensembles of metabolic network reconstructions

Language: Python - Size: 17.2 MB - Last synced: 14 days ago - Pushed: over 1 year ago - Stars: 19 - Forks: 8

opencobra/memote-docker

Easily use the memote command line interface from a docker container.

Language: Shell - Size: 170 KB - Last synced: 14 days ago - Pushed: 5 months ago - Stars: 3 - Forks: 2

opencobra/cookiecutter-memote

A cookiecuttter template for memote model repositories

Language: Python - Size: 94.7 KB - Last synced: about 1 month ago - Pushed: 7 months ago - Stars: 2 - Forks: 4

opencobra/MATLAB.devTools

MATLAB Development Tools

Language: MATLAB - Size: 7.1 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 27 - Forks: 35

opencobra/cookiecutter-python-package

Extensive cookiecutter template for openCOBRA Python packages.

Language: Python - Size: 76.2 KB - Last synced: 14 days ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 0

opencobra/opencobra.github.io

Official openCOBRA website

Language: CSS - Size: 23.3 MB - Last synced: 12 days ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 3

opencobra/artenolis

Automated Reproducibility and Testing Environment for Licensed Software

Language: Java - Size: 8.28 MB - Last synced: 12 days ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 2

opencobra/COBRA.java

Constraint-based reconstruction and analysis via Java

Size: 0 Bytes - Last synced: about 1 month ago - Pushed: about 5 years ago - Stars: 0 - Forks: 1

opencobra/cobrapy_shim

Shim for the COBRA toolbox to call cobrapy functions

Language: Python - Size: 141 KB - Last synced: 3 days ago - Pushed: over 8 years ago - Stars: 1 - Forks: 0

opencobra/schema

xml/rdf schemas for annotating cobra models

Size: 3.91 KB - Last synced: 14 days ago - Pushed: over 6 years ago - Stars: 2 - Forks: 1