Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub / opencobra 33 repositories
Community driven constraint-based reconstruction, analysis and modelling of biology
opencobra/cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
Language: MATLAB - Size: 1.02 GB - Last synced: 14 days ago - Pushed: 15 days ago - Stars: 237 - Forks: 303
opencobra/optlang
optlang - sympy based mathematical programming language
Language: Python - Size: 9.51 MB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 229 - Forks: 49
opencobra/cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
Language: Python - Size: 60.6 MB - Last synced: 8 days ago - Pushed: about 1 month ago - Stars: 444 - Forks: 211
opencobra/swiglpk
Simple swig bindings for the GNU Linear Programming Kit
Language: Python - Size: 19 MB - Last synced: 5 days ago - Pushed: about 2 months ago - Stars: 26 - Forks: 10
opencobra/MASSef
Language: Mathematica - Size: 191 MB - Last synced: about 2 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 1
opencobra/COBRA.tutorials
Repository of tutorials for The COBRA Toolbox
Language: MATLAB - Size: 298 MB - Last synced: about 2 months ago - Pushed: 4 months ago - Stars: 18 - Forks: 45
opencobra/memote
memote – the genome-scale metabolic model test suite
Language: HTML - Size: 12.1 MB - Last synced: about 3 hours ago - Pushed: 4 months ago - Stars: 122 - Forks: 26
opencobra/jeweler
Test and grade genome-scale metabolic models (GEMs).
Language: Nextflow - Size: 2.16 MB - Last synced: about 2 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0
opencobra/memote-docker
Easily use the memote command line interface from a docker container.
Language: Shell - Size: 170 KB - Last synced: about 1 month ago - Pushed: 6 months ago - Stars: 3 - Forks: 2
opencobra/COBRA.papers
Repository for scripts related to reproducing the results of an individual publication
Language: MATLAB - Size: 385 MB - Last synced: 29 days ago - Pushed: 6 months ago - Stars: 8 - Forks: 12
opencobra/cobrapy-website
Language: HTML - Size: 2.81 MB - Last synced: about 2 months ago - Pushed: 7 months ago - Stars: 1 - Forks: 7
opencobra/cookiecutter-memote
A cookiecuttter template for memote model repositories
Language: Python - Size: 94.7 KB - Last synced: about 2 months ago - Pushed: 8 months ago - Stars: 2 - Forks: 4
opencobra/COBRA.jl
High-level, high-performance, constraint-based reconstruction and analysis in Julia
Language: Julia - Size: 11.3 MB - Last synced: 29 days ago - Pushed: about 1 year ago - Stars: 58 - Forks: 31
opencobra/ctf
Chemical table files for constraint-based modelling
Size: 4.64 GB - Last synced: about 2 months ago - Pushed: about 1 year ago - Stars: 3 - Forks: 4
opencobra/Medusa
Analysis of ensembles of metabolic network reconstructions
Language: Python - Size: 17.2 MB - Last synced: 13 days ago - Pushed: over 1 year ago - Stars: 19 - Forks: 8
opencobra/driven
Data-Driven Constraint-based analysis
Language: Python - Size: 672 KB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 12 - Forks: 9
opencobra/MATLAB.devTools
MATLAB Development Tools
Language: MATLAB - Size: 7.1 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 27 - Forks: 35
opencobra/COBRA.binary
Linux, Windows and Mac binaries maintained by the constraint-based reconstruction and analysis community
Language: MATLAB - Size: 171 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 6
opencobra/cookiecutter-python-package
Extensive cookiecutter template for openCOBRA Python packages.
Language: Python - Size: 76.2 KB - Last synced: about 1 month ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 0
opencobra/cobra-component-models
Provide SQLAlchemy ORM and pydantic data models for SQL storage and serialization of COBRA components such as reactions, compounds, and compartments.
Language: Python - Size: 262 KB - Last synced: 10 days ago - Pushed: over 2 years ago - Stars: 3 - Forks: 0
opencobra/COBRA.models
Set of models used for testing COBRA code in continuous integration environments
Language: Julia - Size: 15.3 MB - Last synced: about 2 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1
opencobra/opencobra.github.io
Official openCOBRA website
Language: CSS - Size: 23.3 MB - Last synced: 29 days ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 3
opencobra/artenolis
Automated Reproducibility and Testing Environment for Licensed Software
Language: Java - Size: 8.28 MB - Last synced: 29 days ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 2
opencobra/sphinx_cobra_theme Fork of martamatos/sphinx_cobra_theme
Language: HTML - Size: 727 KB - Last synced: about 2 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0
opencobra/kb_memote Fork of janakagithub/kb_memote
Language: Python - Size: 48.2 MB - Last synced: about 2 months ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0
opencobra/COBRA.java
Constraint-based reconstruction and analysis via Java
Size: 0 Bytes - Last synced: about 2 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 1
opencobra/memote-webservice 📦
Run memote in a microservice with a frontend that allows you to upload and test models.
Language: Python - Size: 129 KB - Last synced: about 1 month ago - Pushed: over 5 years ago - Stars: 0 - Forks: 3
opencobra/cobrapy-bigg-client
Language: Python - Size: 462 KB - Last synced: about 2 months ago - Pushed: almost 6 years ago - Stars: 1 - Forks: 0
opencobra/schema
xml/rdf schemas for annotating cobra models
Size: 3.91 KB - Last synced: about 1 month ago - Pushed: over 6 years ago - Stars: 2 - Forks: 1
opencobra/MASS-Toolbox
Mass Action Stoichiometric Simulation (MASS) Toolbox
Language: Mathematica - Size: 84.5 MB - Last synced: about 2 months ago - Pushed: almost 7 years ago - Stars: 11 - Forks: 8
opencobra/m_model_collection
A collection of M models downloaded from published studies
Language: Jupyter Notebook - Size: 12.8 MB - Last synced: about 2 months ago - Pushed: about 8 years ago - Stars: 14 - Forks: 15
opencobra/pypi_cobrapy_travis
hosts binary wheel installers for unit testing
Language: C - Size: 179 MB - Last synced: about 2 months ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0
opencobra/cobrapy_shim
Shim for the COBRA toolbox to call cobrapy functions
Language: Python - Size: 141 KB - Last synced: 20 days ago - Pushed: over 8 years ago - Stars: 1 - Forks: 0