steineggerlab/SeekRank

Rank homologous protein sequences based on a regressor trained on experimental measures

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steineggerlab/foldseek-multimer-analysis

Language: Python - Size: 24.4 KB - Last synced: 14 days ago - Pushed: 15 days ago - Stars: 0 - Forks: 0

steineggerlab/unicore

Universal and efficient core gene phylogeny with Foldseek and ProstT5

Language: Rust - Size: 113 KB - Last synced: 9 days ago - Pushed: 10 days ago - Stars: 5 - Forks: 0

steineggerlab/foldseek-analysis

Scripts to benchmark and train foldseek

Language: Jupyter Notebook - Size: 43.5 MB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 19 - Forks: 4

steineggerlab/foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.

Language: C - Size: 24.2 MB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 665 - Forks: 91

steineggerlab/Metabuli

Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

Language: C++ - Size: 16.8 MB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 71 - Forks: 7

steineggerlab/ufcg

UFCG: Universal Fungal Core Genes

Language: Java - Size: 71.1 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 26 - Forks: 0

steineggerlab/foldseek-regression

Regression test for foldseek

Language: Shell - Size: 9.13 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2 - Forks: 1

steineggerlab/foldcomp

Compressing protein structures effectively with torsion angles

Language: C++ - Size: 6.48 MB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 142 - Forks: 14

steineggerlab/afdb-clusters-web

Language: Jupyter Notebook - Size: 20.6 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 2 - Forks: 0

steineggerlab/alphafold Fork of google-deepmind/alphafold

Open source code for AlphaFold.

Language: Python - Size: 15.7 MB - Last synced: about 2 months ago - Pushed: 3 months ago - Stars: 10 - Forks: 7

steineggerlab/foldmason

Language: C - Size: 25.2 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 12 - Forks: 0

steineggerlab/colabfold-protocol

ColabFold protocol

Language: Jupyter Notebook - Size: 576 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 6 - Forks: 3

steineggerlab/petasearch

🧬 Efficient parallelized peta-scale protein database search

Language: C - Size: 17.5 MB - Last synced: about 2 months ago - Pushed: 5 months ago - Stars: 42 - Forks: 0

steineggerlab/conterminator

Detection of incorrectly labeled sequences across kingdoms

Language: C - Size: 12.8 MB - Last synced: 8 months ago - Pushed: over 1 year ago - Stars: 67 - Forks: 6

steineggerlab/afdb-clusters-analysis

Scripts to generate and analyze afdb clusters

Language: Jupyter Notebook - Size: 197 KB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 2 - Forks: 0

steineggerlab/foldcomp-analysis

Language: C - Size: 14.1 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

steineggerlab/Metabuli-regression

Regression tests for Metabuli

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steineggerlab/petasearch-regression

Language: C++ - Size: 40.6 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

steineggerlab/Metabuli-temp Fork of steineggerlab/Metabuli 📦

Taxonomical classifier using AD k-mer

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steineggerlab/ufcg-web

UFCG website

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steineggerlab/MetabuliUniq Fork of steineggerlab/Metabuli

An experimental fork for implementing unique k-mer counting

Size: 1.6 MB - Last synced: 12 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

steineggerlab/probeit

Design capture probes

Language: Python - Size: 893 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 6 - Forks: 3

steineggerlab/steineggerlab.github.io

Steinegger Lab page

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