thorstenwagner/ij-ridgedetection

Detect ridges / lines with imagej

Language: Java - Size: 261 KB - Last synced at: 10 days ago - Pushed at: about 6 years ago - Stars: 44 - Forks: 28

thorstenwagner/mogp Fork of fraenkel-lab/mogp

Mixture of Gaussian Processes Model for Sparse Longitudinal Data

Size: 19 MB - Last synced at: 10 days ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

thorstenwagner/TraJ

Library for diffusion trajectory analysis

Language: Java - Size: 323 KB - Last synced at: 10 days ago - Pushed at: about 8 years ago - Stars: 12 - Forks: 4

thorstenwagner/modules Fork of envmodules/modules

Environment Modules: provides dynamic modification of a user's environment

Size: 12.1 MB - Last synced at: 10 days ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

thorstenwagner/ij-blob

ImageJ library to detect and analyse connected components (blobs) in binary images

Language: Java - Size: 176 KB - Last synced at: 11 days ago - Pushed at: about 1 year ago - Stars: 10 - Forks: 3

thorstenwagner/napari-clusters-plotter Fork of BiAPoL/napari-clusters-plotter

A plugin to use with napari for clustering objects according to their properties.

Language: Jupyter Notebook - Size: 92.9 MB - Last synced at: 10 days ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

thorstenwagner/ij-nl-means

Non local means filter for ImageJ

Language: Java - Size: 174 KB - Last synced at: 10 days ago - Pushed at: over 7 years ago - Stars: 12 - Forks: 6

thorstenwagner/ij-trajectory-classifier

This plugin segments and classify diffusion trajectories

Language: Java - Size: 47 MB - Last synced at: 10 days ago - Pushed at: almost 8 years ago - Stars: 4 - Forks: 4

thorstenwagner/ij-shape-smoothing

Shape Smoothing Plugin for ImageJ

Language: Java - Size: 52.7 KB - Last synced at: 10 days ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1

thorstenwagner/warp Fork of warpem/warp

Language: C# - Size: 9.85 MB - Last synced at: 10 days ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

thorstenwagner/planemo Fork of galaxyproject/planemo

Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.

Size: 10 MB - Last synced at: 10 days ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

thorstenwagner/jgrapht Fork of jgrapht/jgrapht

Master repository for the JGraphT project

Language: Java - Size: 4.97 MB - Last synced at: 10 days ago - Pushed at: over 10 years ago - Stars: 1 - Forks: 0

thorstenwagner/ParallelColt Fork of rwl/ParallelColt

Parallel Colt is a multithreaded version of Colt.

Language: Java - Size: 9.62 MB - Last synced at: 10 days ago - Pushed at: about 9 years ago - Stars: 1 - Forks: 0

thorstenwagner/kdtree

KDTree implementation Simon Levy

Language: Java - Size: 63.5 KB - Last synced at: 10 days ago - Pushed at: about 9 years ago - Stars: 5 - Forks: 1

thorstenwagner/pytom-template-matching-gpu Fork of SBC-Utrecht/pytom-match-pick

Only GPU template matching from the PyTOM toolbox

Language: Python - Size: 2.24 MB - Last synced at: 10 days ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

thorstenwagner/staged-recipes Fork of conda-forge/staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

Language: Python - Size: 101 MB - Last synced at: 10 days ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

thorstenwagner/polnet Fork of anmartinezs/polnet

Generates synthetic datasets for Cryo-Electron Tomography

Size: 20.4 MB - Last synced at: 10 days ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

thorstenwagner/ij-shape-filter

Shape Filter Plugin for ImageJ

Language: Java - Size: 170 KB - Last synced at: 10 days ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

thorstenwagner/R-ClustMAPDP

Maximum a-posteriori Dirichlet Process Mixtures Clustering Algorithm for R

Language: R - Size: 124 KB - Last synced at: 10 days ago - Pushed at: almost 6 years ago - Stars: 6 - Forks: 3

thorstenwagner/napari-skimage-regionprops Fork of haesleinhuepf/napari-skimage-regionprops

Feature extraction for labeled objects in images using regionprops from scikit-image

Size: 34.8 MB - Last synced at: 10 days ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

thorstenwagner/de-rse.github.io Fork of DE-RSE/de-rse.github.io

Web repository

Size: 185 MB - Last synced at: 10 days ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

thorstenwagner/learn_cryoem_math Fork of geoffwoollard/learn_cryoem_math

Size: 1.31 GB - Last synced at: 10 days ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

thorstenwagner/ij-robust-split

Implementation of Kumar's et. al. "A rule-based approach for robust clump splitting" algorithm as ImageJ plugin

Language: Java - Size: 4.7 MB - Last synced at: 10 days ago - Pushed at: almost 9 years ago - Stars: 2 - Forks: 0

thorstenwagner/ij-ndef-ext

Serveral extension or helper plugins for the nanodefine project

Language: Java - Size: 152 KB - Last synced at: 10 days ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

thorstenwagner/ij-r-plot

Small plugin to plot histograms and make basic fittings in ImageJ with R

Language: Java - Size: 41 KB - Last synced at: 10 days ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 1

thorstenwagner/ij-particlesizer

ImageJ plugin to derive number based size distributions based on recorded TEM images. A focus of the development was to provide different splitting methods to handle agglomerates and aggregates, robust handling of different noise levels and adaptability to non-standard images.

Language: Java - Size: 28.3 KB - Last synced at: 10 days ago - Pushed at: about 8 years ago - Stars: 1 - Forks: 1

thorstenwagner/imagej.github.io Fork of imagej/imagej.github.io

The ImageJ wiki

Size: 1.06 GB - Last synced at: 10 days ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

thorstenwagner/edubit_k7_2

Ein MakeCode-Projekt

Language: TypeScript - Size: 2.93 KB - Last synced at: 10 days ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

thorstenwagner/timer_k6

Ein MakeCode-Projekt

Language: TypeScript - Size: 5.86 KB - Last synced at: 10 days ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

thorstenwagner/napari Fork of napari/napari

napari: a fast, interactive, multi-dimensional image viewer for python

Size: 26.4 MB - Last synced at: 10 days ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

thorstenwagner/eman2 Fork of cryoem/eman2

A scientific image processing software suite with a focus on CryoEM and CryoET

Language: Python - Size: 172 MB - Last synced at: 10 days ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

thorstenwagner/cryoCARE_mpido Fork of juglab/cryoCARE_pip

MPI Dortmund edition of cryoCARE

Language: Python - Size: 95.7 KB - Last synced at: 10 days ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 2

thorstenwagner/subtomo2Chimera Fork of builab/subtomo2Chimera

Size: 1.54 MB - Last synced at: 10 days ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

thorstenwagner/cryodrgn Fork of ml-struct-bio/cryodrgn

Neural networks for cryo-EM reconstruction

Size: 7.1 MB - Last synced at: 10 days ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

thorstenwagner/InSilicoTEM Fork of M4I-nanoscopy/InSilicoTEM

Simulator of a Transmission Electron Microscope (TEM) optimized for biological specimen.

Size: 11.3 MB - Last synced at: 10 days ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

thorstenwagner/edubit

edubit programme

Language: TypeScript - Size: 4.88 KB - Last synced at: 10 days ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

thorstenwagner/cryo-EM-bash-scripts Fork of shahpnmlab/cryoEM-Bash

scripts to monitor cryo-em jobs

Size: 17.6 KB - Last synced at: 10 days ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

thorstenwagner/Kalman-and-Bayesian-Filters-in-Python Fork of rlabbe/Kalman-and-Bayesian-Filters-in-Python

Kalman Filter book using Jupyter Notebook. Focuses on building intuition and experience, not formal proofs. Includes Kalman filters,extended Kalman filters, unscented Kalman filters, particle filters, and more. All exercises include solutions.

Size: 488 MB - Last synced at: 10 days ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

thorstenwagner/Gooey Fork of chriskiehl/Gooey

Turn (almost) any Python command line program into a full GUI application with one line

Size: 3.4 MB - Last synced at: 10 days ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

thorstenwagner/bst-med-ude

BibTex Zitierstil (bst) für Doktorarbeiten an der Medizinischen Fakultät der Uni Duisburg Essen / BibTex citation style (bst) for PhD theses at the medical faculty of the university duisburg essen

Size: 40 KB - Last synced at: 10 days ago - Pushed at: over 8 years ago - Stars: 1 - Forks: 0

thorstenwagner/keras Fork of keras-team/keras

Deep Learning for humans

Language: Python - Size: 11.6 MB - Last synced at: 10 days ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

thorstenwagner/docker-java8-maven Fork of kaiwinter/docker-java8-maven

Sets up a container with oracle jdk8 and maven 3

Size: 23.4 KB - Last synced at: 10 days ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 1

thorstenwagner/docker-yolo-keras

Docker for yolo-keras

Size: 31.3 KB - Last synced at: 10 days ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

thorstenwagner/basic-yolo-keras Fork of experiencor/keras-yolo2

Easy training on custom dataset. Various backends (MobileNet and SqueezeNet) supported. A YOLO demo to detect raccoon run entirely in brower is accessible at https://git.io/vF7vI (not on Windows).

Language: Jupyter Notebook - Size: 50.9 MB - Last synced at: 10 days ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 1

thorstenwagner/r-diffusion-analysis

My scripts for diffusion analysis

Language: R - Size: 2.93 KB - Last synced at: 10 days ago - Pushed at: over 9 years ago - Stars: 1 - Forks: 0

thorstenwagner/docker-deeppicker

Size: 22.5 KB - Last synced at: 10 days ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0

thorstenwagner/ij-nanotrackj

NanoTrackJ is an ImageJ/Fiji plugin to characterize the size of nanoparticles by its diffusion trajectories.

Language: Java - Size: 51.8 KB - Last synced at: 10 days ago - Pushed at: over 7 years ago - Stars: 2 - Forks: 1

thorstenwagner/docker-sphire

Size: 13.7 KB - Last synced at: 10 days ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

thorstenwagner/ij-ellipsesplit

ImageJ Plugin to split binary objects by ellipse fitting

Language: Java - Size: 99.6 KB - Last synced at: 10 days ago - Pushed at: about 8 years ago - Stars: 1 - Forks: 1

thorstenwagner/ij-irregular-watershed

Watershed for irregular objects

Language: Java - Size: 12.7 KB - Last synced at: 10 days ago - Pushed at: about 9 years ago - Stars: 0 - Forks: 0

thorstenwagner/JOM Fork of girtel/JOM

Java Optimization Modeler

Language: Java - Size: 168 KB - Last synced at: 10 days ago - Pushed at: about 9 years ago - Stars: 0 - Forks: 0

thorstenwagner/ij-ndef-daemon

Daemon for the NanoDefine ParticleSizer for AutoTEM

Language: Java - Size: 18.6 KB - Last synced at: 10 days ago - Pushed at: over 8 years ago - Stars: 0 - Forks: 0

thorstenwagner/ij-trackmate-findmaxima

Find maxima detector for trackmate (module)

Language: Java - Size: 21.5 KB - Last synced at: 10 days ago - Pushed at: almost 9 years ago - Stars: 1 - Forks: 4

thorstenwagner/spie-photonics-europe-2016

Software for publication at SPIE photonics europe 2016

Language: Java - Size: 59.4 MB - Last synced at: 10 days ago - Pushed at: over 9 years ago - Stars: 0 - Forks: 0

thorstenwagner/ij-trackmate-viewer

This little plugin loads an xml file exported by trackmate and display the tracks as overlay in an selected image

Language: Java - Size: 5.86 KB - Last synced at: 10 days ago - Pushed at: over 9 years ago - Stars: 0 - Forks: 0

thorstenwagner/thorstenwagner.github.io

Size: 0 Bytes - Last synced at: 10 days ago - Pushed at: over 9 years ago - Stars: 0 - Forks: 0

thorstenwagner/TrackMate Fork of trackmate-sc/TrackMate

TrackMate is your buddy for your everyday tracking.

Language: Java - Size: 6.04 MB - Last synced at: 10 days ago - Pushed at: over 9 years ago - Stars: 0 - Forks: 0

thorstenwagner/TrackMate-extras Fork of tinevez/TrackMate-extras

Some extra modules for TrackMate

Language: Java - Size: 101 KB - Last synced at: 10 days ago - Pushed at: over 10 years ago - Stars: 0 - Forks: 0

thorstenwagner/TrackMate-examples Fork of trackmate-sc/TrackMate-examples

A simple repository that shows how to extend TrackMate with your own modules.

Language: Java - Size: 371 KB - Last synced at: 10 days ago - Pushed at: over 10 years ago - Stars: 0 - Forks: 0