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GitHub / 2lambda123 / nextclade

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/2lambda123%2Fnextclade

Stars: 0
Forks: 0
Open Issues: 0

License: mit
Language: Rust
Repo Size: 45.7 MB
Dependencies: 2,991

Created: 7 months ago
Updated: 18 days ago
Last pushed: about 2 months ago
Last synced: 18 days ago

Files

Readme

Dependencies

tests/diff-vs-base/requirements.txt pypi

pandas * test
polars * test
pyarrow * test
snakemake * test
typer * test

.github/workflows/builder-docker-image.yml actions

actions/cache v3 composite
actions/checkout v3 composite
docker/login-action v2 composite

.github/workflows/cli.yml actions

actions/cache v3 composite
actions/checkout v3 composite
actions/download-artifact v3 composite
actions/upload-artifact v3 composite
docker/login-action v2 composite

.github/workflows/web.yml actions

actions/cache v3 composite
actions/checkout v3 composite
actions/download-artifact v3 composite
actions/upload-artifact v3 composite
docker/login-action v2 composite

packages_rs/tree-builder-prototype/setup.py pypi

biopython >=1.67,
pandas >=0.17.1

.github/workflows/bioconda.yml actions

actions/checkout v3 composite

Cargo.toml cargo

packages_rs/nextclade/Cargo.toml cargo

assert2 =0.3.11 development
criterion =0.5.1 development
rstest =0.17.0 development
rstest_reuse =0.5.0 development
assert2 =0.3.11
auto_ops =0.3.0
bio =1.3.1
bio-types =1.0.0
chrono =0.4.26
clap =4.4.2
clap_complete =4.4.1
clap_complete_fig =4.4.0
color-eyre =0.6.2
csv =1.2.2
ctor =0.2.2
derive_more =0.99.17
edit-distance =2.1.0
either =1.8.1
env_logger =0.10.0
eyre =0.6.8
flate2 =1.0.26
gcollections =1.5.0
getrandom =0.2.10
indexmap =1.9.3
intervallum =1.4.0
itertools =0.11.0
lazy_static =1.4.0
log =0.4.19
maplit =1.0.2
multimap =0.8.3
num =0.4.0
num-traits =0.2.15
num_cpus =1.16.0
optfield =0.3.0
ordered-float =3.9.1
owo-colors =3.5.0
pretty_assertions =1.3.0
rayon =1.7.0
regex =1.8.4
schemars =0.8.12
semver =1.0.17
serde =1.0.164
serde_json =1.0.99
serde_repr =0.1.12
serde_stacker =0.1.8
serde_yaml =0.9.22
strsim =0.10.0
strum =0.25.0
strum_macros =0.25.0
tinytemplate =1.2.1
traversal =0.1.2
urlencoding =2.1.2
validator =0.16.1
wasm-bindgen =0.2.87
zip =0.6.6

packages_rs/nextclade-cli/Cargo.toml cargo

assert2 =0.3.11 development
criterion =0.5.1 development
rstest =0.17.0 development
rstest_reuse =0.5.0 development
assert2 =0.3.11
clap =4.4.2
clap-markdown =0.1.3
clap_complete =4.4.1
clap_complete_fig =4.4.0
color-eyre =0.6.2
comfy-table =7.0.1
crossbeam =0.8.2
crossbeam-channel =0.5.8
ctor =0.2.2
dotenv =0.15.0
dotenv_codegen =0.15.0
eyre =0.6.8
indexmap =1.9.3
itertools =0.11.0
lazy_static =1.4.0
log =0.4.19
num_cpus =1.16.0
ordered-float =3.9.1
owo-colors =3.5.0
pretty_assertions =1.3.0
rayon =1.7.0
regex =1.8.4
reqwest =0.11.18
schemars =0.8.12
semver =1.0.17
serde =1.0.164
serde_json =1.0.99
strum =0.25.0
strum_macros =0.25
tinytemplate =1.2.1
url =2.4.0
zip =0.6.6

packages_rs/nextclade-web/Cargo.toml cargo

assert2 =0.3.11 development
wasm-bindgen-test =0.3.37 development
assert2 =0.3.11
chrono =0.4.26
console_error_panic_hook =0.1.7
eyre =0.6.8
getrandom =0.2.10
itertools =0.11.0
js-sys =0.3.64
log =0.4.19
schemars =0.8.12
serde =1.0.164
serde-wasm-bindgen =0.5.0
wasm-bindgen =0.2.87
wasm-logger =0.2.0
web-sys =0.3.64

docs/Dockerfile docker

continuumio/miniconda3 latest build

paper/Dockerfile docker

openjournals/paperdraft latest build

tools/osxcross/Dockerfile docker

ubuntu@sha256 31cd7bbfd36421dfd338bceb36d803b3663c1bfa87dfe6af7ba764b5bf34de05 build

packages_rs/nextclade-web/package.json npm

@babel/core 7.17.9 development
@babel/node 7.16.8 development
@babel/plugin-proposal-decorators 7.17.9 development
@babel/preset-env 7.16.11 development
@babel/preset-typescript 7.16.7 development
@mdx-js/loader 1.6.22 development
@mdx-js/react 1.6.22 development
@next/eslint-plugin-next 12.1.5 development
@next/mdx 12.1.5 development
@nuxt/friendly-errors-webpack-plugin 2.5.2 development
@primer/css 19.8.2 development
@schemastore/package 0.0.6 development
@svgr/webpack 6.2.1 development
@testing-library/jest-dom 5.16.4 development
@testing-library/react 13.1.1 development
@testing-library/user-event 14.1.1 development
@types/classnames 2.3.0 development
@types/compare-versions 3.3.0 development
@types/compression-webpack-plugin 9.0.0 development
@types/connect-history-api-fallback 1.3.5 development
@types/copy-webpack-plugin 6.4.3 development
@types/express 4.17.13 development
@types/extra-watch-webpack-plugin 1.0.3 development
@types/file-saver 2.0.5 development
@types/friendly-errors-webpack-plugin 0.1.4 development
@types/fs-extra 9.0.13 development
@types/glob 7.2.0 development
@types/history 4.7.11 development
@types/intercept-stdout 0.1.0 development
@types/jest 27.4.1 development
@types/jest-axe 3.5.3 development
@types/js-yaml 4.0.5 development
@types/jszip 3.4.1 development
@types/lodash 4.14.182 development
@types/lodash-webpack-plugin 0.11.6 development
@types/luxon 2.3.1 development
@types/mdx-js__react 1.5.5 development
@types/papaparse 5.3.2 development
@types/react 18.0.8 development
@types/react-copy-to-clipboard 5.0.4 development
@types/react-dom 18.0.2 development
@types/react-helmet 6.1.5 development
@types/react-no-ssr 1.1.3 development
@types/react-redux 7.1.24 development
@types/react-resize-detector 5.0.0 development
@types/react-router 5.1.18 development
@types/react-router-dom 5.3.3 development
@types/react-select 5.0.0 development
@types/react-toggle 4.0.3 development
@types/react-virtualized-auto-sizer 1.0.1 development
@types/react-window 1.8.5 development
@types/reactstrap 8.7.1 development
@types/recharts 1.8.23 development
@types/rimraf 3.0.2 development
@types/semver 7.3.9 development
@types/serialize-javascript 5.0.2 development
@types/styled-components 5.1.25 development
@types/terser-webpack-plugin 4.1.0 development
@types/url-join 4.0.1 development
@types/uuid 8.3.4 development
@types/webpack 5.28.0 development
@types/webpackbar 4.0.3 development
@typescript-eslint/eslint-plugin 5.21.0 development
@typescript-eslint/parser 5.21.0 development
@typescript-eslint/typescript-estree 5.21.0 development
all-contributors-cli 6.20.0 development
allow-methods 3.1.0 development
babel-plugin-parameter-decorator 1.0.16 development
babel-plugin-transform-typescript-metadata 0.3.2 development
commander 10.0.1 development
compression-webpack-plugin 9.2.0 development
connect-history-api-fallback 1.6.0 development
conventional-changelog-cli 2.2.2 development
copy-webpack-plugin 10.2.4 development
cross-env 7.0.3 development
css-loader 6.7.1 development
dotenv 16.0.0 development
eslint 8.14.0 development
eslint-config-airbnb 19.0.4 development
eslint-config-airbnb-base 15.0.0 development
eslint-config-airbnb-typescript 17.0.0 development
eslint-config-next 12.1.5 development
eslint-config-prettier 8.5.0 development
eslint-config-react-app 7.0.1 development
eslint-formatter-codeframe 7.32.1 development
eslint-import-resolver-ts 0.4.2 development
eslint-import-resolver-typescript 2.7.1 development
eslint-loader 4.0.2 development
eslint-plugin-array-func 3.1.7 development
eslint-plugin-cflint 1.0.0 development
eslint-plugin-cypress 2.12.1 development
eslint-plugin-flowtype 8.0.3 development
eslint-plugin-i18next 5.1.2 development
eslint-plugin-import 2.26.0 development
eslint-plugin-jest 26.1.5 development
eslint-plugin-jest-dom 4.0.1 development
eslint-plugin-json 3.1.0 development
eslint-plugin-jsx-a11y 6.5.1 development
eslint-plugin-lodash 7.4.0 development
eslint-plugin-no-loops 0.3.0 development
eslint-plugin-no-secrets 0.8.9 development
eslint-plugin-node 11.1.0 development
eslint-plugin-only-ascii 0.0.0 development
eslint-plugin-only-warn 1.0.3 development
eslint-plugin-prettier 4.0.0 development
eslint-plugin-promise 6.0.0 development
eslint-plugin-react 7.29.4 development
eslint-plugin-react-hooks 4.5.0 development
eslint-plugin-react-perf 3.3.1 development
eslint-plugin-react-redux 4.0.0 development
eslint-plugin-redux-saga 1.3.2 development
eslint-plugin-security 1.5.0 development
eslint-plugin-sonarjs 0.13.0 development
eslint-plugin-unicorn 42.0.0 development
eslint-plugin-unused-imports 2.0.0 development
express 4.18.0 development
express-static-gzip 2.1.5 development
extra-watch-webpack-plugin 1.0.3 development
file-loader 6.2.0 development
fork-ts-checker-webpack-plugin 6.5.1 development
fs-extra 10.1.0 development
i18next-parser 6.3.0 development
identity-obj-proxy 3.0.0 development
is-interactive 1.0.0 development
jest 28.0.1 development
jest-axe 6.0.0 development
jest-chain 1.1.5 development
jest-extended 2.0.0 development
jest-raw-loader 1.0.1 development
jest-runner-eslint 1.0.0 development
jest-styled-components 7.0.8 development
jest-transformer-mdx 3.3.0 development
jest-watch-typeahead 1.1.0 development
js-yaml 4.1.0 development
json-autotranslate 1.10.3 development
json-loader 0.5.7 development
json-schema-to-typescript 13.0.1 development
lodash-webpack-plugin 0.11.6 development
map.prototype.tojson 0.1.3 development
next-transpile-modules 9.0.0 development
nodemon 2.0.15 development
npm-run-all 4.1.5 development
papaparse 5.3.2 development
pkg 5.6.0 development
postcss-flexbugs-fixes 5.0.2 development
postcss-loader 6.2.1 development
postcss-preset-env 7.4.4 development
prettier 2.6.2 development
raw-loader 4.0.2 development
react-dropzone 12.1.0 development
react-query 3.38.0 development
remark-autolink-headings 6.0.1 development
remark-breaks 2.0.1 development
remark-images 2.0.0 development
remark-math 4.0.0 development
remark-slug 6.0.0 development
remark-toc 7.0.0 development
rimraf 3.0.2 development
sass 1.51.0 development
set.prototype.tojson 0.1.1 development
source-map-loader 3.0.1 development
style-loader 3.3.1 development
stylehacks 5.1.0 development
stylelint 14.8.0 development
stylelint-bare-webpack-plugin 2.1.0 development
stylelint-config-css-modules 4.1.0 development
stylelint-config-prettier 9.0.3 development
stylelint-config-primer 9.0.0 development
stylelint-config-recommended 7.0.0 development
stylelint-config-recommended-scss 6.0.0 development
stylelint-config-standard 25.0.0 development
stylelint-config-styled-components 0.1.1 development
stylelint-declaration-block-no-ignored-properties 2.5.0 development
stylelint-group-selectors 1.0.8 development
stylelint-high-performance-animation 1.6.0 development
stylelint-no-indistinguishable-colors 1.3.0 development
stylelint-order 5.0.0 development
stylelint-prettier 2.0.0 development
stylelint-processor-styled-components 1.10.0 development
stylelint-scss 4.2.0 development
svgo 1.3.2 development
ts-essentials 9.1.2 development
ts-jest 27.1.4 development
ts-toolbelt 9.6.0 development
typed-redux-saga 1.4.0 development
typescript 4.6.3 development
url-loader 4.1.1 development
utility-types 3.10.0 development
webpack 5.72.0 development
webpack-cli 4.9.2 development
webpackbar 5.0.2 development
yaml-loader 0.8.0 development
animate.css 4.1.1
auspice 2.50.0
autoprefixer 10.4.5
awesomplete 1.1.5
axios 0.27.1
bootstrap 4.6.1
bowser 2.11.0
classnames 2.3.1
compare-versions 4.1.3
core-js 3.22.2
countries-list 2.6.1
css.escape 1.5.1
debug 4.3.4
fast-copy 2.1.3
fast-memoize 2.5.2
fasy 9.0.0
file-saver 2.0.5
flag-icon-css 3.5.0
formik 2.2.9
history 5.3.0
i18next 19.3.2
immutable 4.0.0
intercept-stdout 0.1.2
is-absolute-url 3.0.3
jschardet 3.0.0
jsonexport 3.2.0
jszip 3.9.1
lodash 4.17.21
luxon 2.3.2
marked 4.0.14
memoize-one 6.0.0
nanoid 3.3.6
next 12.1.6
next-compose-plugins 2.2.1
numbro 2.3.6
p-memoize 4.0.4
polished 4.2.2
pretty-bytes 5.6.0
prop-types 15.8.1
re-reselect 4.0.0
react 18.1.0
react-awesome-popover 6.1.1
react-copy-to-clipboard 5.1.0
react-dom 18.1.0
react-error-boundary 3.1.4
react-file-icon 1.1.0
react-helmet 6.1.0
react-i18next 11.3.3
react-icons 4.11.0
react-if 4.1.4
react-loader-spinner 5.1.4
react-markdown 6.0.3
react-no-ssr 1.1.0
react-redux 7.2.8
react-resize-detector 7.0.0
react-select 5.3.0
react-toggle 4.1.2
react-virtualized-auto-sizer 1.0.6
react-virtualized-select 3.1.3
react-window 1.8.7
reactstrap 8.10.1
recharts 2.1.9
recoil 0.7.7
recoil-persist 4.2.0
redux 4.2.0
redux-saga 1.1.3
redux-thunk 2.4.1
reflect-metadata 0.1.13
regenerator-runtime 0.13.9
rehype-raw 5.1.0
rehype-sanitize 4.0.0
remark-gfm 1.0.0
reselect 4.1.5
semver 7.3.7
serialize-javascript 6.0.0
styled-components 5.3.5
threads 1.7.0
threads-plugin 1.4.0
typeface-lato 1.1.13
url-join 4.0.1
use-debounce 7.0.1
uuid 8.3.2
yargs 17.4.1

docs/environment.yml pypi

Cargo.lock cargo

355 dependencies

packages_rs/nextclade-web/yarn.lock npm

2224 dependencies