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GitHub / AstraZeneca / NESS

Official implementation of "NESS: Node Embeddings from Static Subgraphs"

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AstraZeneca%2FNESS

Stars: 8
Forks: 0
Open Issues: 1

License: apache-2.0
Language: Python
Repo Size: 762 KB
Dependencies: 180

Created: about 1 year ago
Updated: 6 months ago
Last pushed: about 1 year ago
Last synced: 6 months ago

Topics: contrastive-learning, graph, graph-auto-encoder, link-prediction, node-embedding, self-supervised-learning, subgraph

Files

Readme

Dependencies

requirements.txt pypi

Cython ==0.29.32
Deprecated ==1.2.13
Flask ==2.2.2
GPUtil ==1.4.0
HeapDict ==1.0.1
Pillow ==9.2.0
PyGSP ==0.5.1
PySocks ==1.7.1
Pygments ==2.14.0
Werkzeug ==2.2.2
aiosignal ==1.3.1
anndata ==0.8.0
arboreto ==0.1.6
attrs ==22.1.0
autopage ==0.5.1
bio ==1.5.6
biopython ==1.81
biothings-client ==0.2.6
biotite ==0.37.0
black ==22.3.0
bokeh ==2.4.3
cdt ==0.6.0
certifi ==2022.6.15
cfgv ==3.3.1
charset-normalizer ==2.1.0
class-resolver ==0.3.10
click ==8.0.4
click-default-group ==1.2.2
cliff ==3.10.1
cloudpickle ==2.1.0
cmaes ==0.8.2
cmake ==3.24.0
cmd2 ==2.4.2
colorlog ==6.6.0
conditional-independence ==0.1a6
cycler ==0.11.0
dask ==2023.3.1
databricks-cli ==0.17.1
dataclasses ==0.6
dataclasses-json ==0.5.7
datatable ==1.0.0
decorator ==5.1.1
distlib ==0.3.6
distributed ==2023.3.1
docdata ==0.0.3
docker ==5.0.3
et-xmlfile ==1.1.0
filelock ==3.8.0
fonttools ==4.34.4
frozendict ==2.3.6
frozenlist ==1.3.3
fsspec ==2023.3.0
future ==0.18.3
gdown ==4.6.6
gies ==0.0.1
gprofiler-official ==1.0.0
graphical-model-learning ==0.1a8
graphical-models ==0.1a19
graphtools ==1.5.3
graphviz ==0.20.1
grpcio ==1.50.0
gunicorn ==20.1.0
h5py ==3.8.0
identify ==2.5.21
idna ==3.3
igraph ==0.10.4
ilock ==1.0.3
ipdb ==0.13.13
isort ==5.10.1
itsdangerous ==2.1.2
joblib ==1.1.0
jsonschema ==4.17.0
kiwisolver ==1.4.4
lazypredict ==0.2.12
lightgbm ==3.3.3
littleballoffur ==2.1.12
littleutils ==0.2.2
llvmlite ==0.39.1
locket ==1.0.0
lz4 ==4.3.2
magic-impute ==3.0.0
marshmallow ==3.17.0
marshmallow-enum ==1.5.1
matplotlib ==3.5.2
more-click ==0.1.1
more-itertools ==8.14.0
msgpack ==1.0.4
mygene ==3.2.2
mypy-extensions ==0.4.3
natsort ==8.3.1
networkit ==7.1
networkx ==2.8.5
nodeenv ==1.7.0
numba ==0.56.4
numexpr ==2.8.4
numpy ==1.23.1
openpyxl ==3.1.2
optuna ==2.10.1
outdated ==0.2.2
packaging ==21.3
pandas ==1.3.5
partd ==1.3.0
patsy ==0.5.3
pbr ==5.9.0
pexpect ==4.8.0
pgmpy ==0.1.21
platformdirs ==2.5.4
plotly ==5.12.0
pooch ==1.7.0
portalocker ==2.7.0
pre-commit ==2.19.0
pre-commit-hooks ==4.2.0
prettytable ==3.3.0
progressbar2 ==4.2.0
prometheus-flask-exporter ==0.20.3
protobuf ==3.20.1
psutil ==5.9.4
ptyprocess ==0.7.0
pyarrow ==11.0.0
pydot ==1.4.2
pygam ==0.8.0
pykeen ==1.9.0
pynndescent ==0.5.8
pyparsing ==3.0.9
pyperclip ==1.8.2
pyrsistent ==0.19.2
pystow ==0.4.6
python-igraph ==0.10.4
python-louvain ==0.16
python-utils ==3.5.2
pytz ==2022.1
querystring-parser ==1.2.4
rdkit-pypi ==2022.3.4
requests ==2.28.1
rexmex ==0.1.0
scanpy ==1.9.3
scikit-learn ==1.1.2
scikit-multilearn ==0.2.0
scipy ==1.9.0
scprep ==1.2.2
seaborn ==0.11.2
session-info ==1.0.0
six ==1.16.0
sklearn ==0.0
skorch ==0.12.0
skrebate ==0.62
slingpy ==0.2.12
sortedcontainers ==2.4.0
sqlparse ==0.4.2
statsmodels ==0.13.5
stdlib-list ==0.8.0
stevedore ==4.0.0
tabulate ==0.8.10
tasklogger ==1.2.0
tblib ==1.7.0
texttable ==1.6.4
threadpoolctl ==3.1.0
tokenizers ==0.13.2
toml ==0.10.2
toolz ==0.12.0
torch ==1.11.0
torch-cluster ==1.6.0
torch-geometric ==2.0.4
torch-max-mem ==0.0.2
torch-ppr ==0.0.8
torch-scatter ==2.0.9
torch-sparse ==0.6.14
torchaudio ==0.11.0
torchvision ==0.12.0
tqdm ==4.64.0
typing ==3.7.4.3
typing-inspect ==0.7.1
typing_extensions ==4.3.0
urllib3 ==1.26.11
virtualenv ==20.16.7
wcwidth ==0.2.5
wrapt ==1.15.0
xxhash ==3.2.0
zict ==2.2.0
zipp ==3.8.1