Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: pypi: bio

bio
24 versions
Latest release: 4 months ago
13 dependent packages
24,768 downloads last month

View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/bio

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/ialbert%2Fbio

Dependent Repos 108

erma0x/stroke-prediction-model
Data exploration, preprocessing, analysis and building a stroke model prediction in the life of the patient. Analysis based 4 different machine learning models.
  • ==0.5.0 requirements.txt

Size: 4.43 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

AstraZeneca/StarGazer
StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a novel target prioritization scoring system in an interactive Python-based Streamlit dashboard. StarGazer displays target prioritization scores for genes associated with 1844 phenotypic traits.
  • ==1.1.3 requirements.txt

Size: 7.43 MB - Last synced: 7 months ago - Pushed: 9 months ago

regnihnu/ujor_lab_hieu
My Microbiology research in the Ujor Laboratory at UW-Madison.
  • ==1.3.9 requirements_bash.txt

Size: 6.36 MB - Last synced: 3 months ago - Pushed: 3 months ago

BSDExabio/structural_DLFA
Deep learning and structure based hypothesis generation for functional annotation
  • ==1.0.6 requirements.txt

Size: 190 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

christelvanharen/data_science_project
  • * requirements.txt

Size: 4.97 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

arighosh1/BindingAffinity_and_Antigency
  • ==1.3.3 requirements.txt

Size: 19.6 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

ddatta-DAC/ToxifyBaseline
  • ==0.1.0 requirements.txt

Size: 29.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

yanhui-k/AnnoSmk
annotation base on snakemake
  • * config/requirements.txt

Size: 11.9 MB - Last synced: 9 days ago - Pushed: 9 days ago

R0L02796/BioInfo
  • * Pipfile
  • ==1.3.9 Pipfile.lock

Size: 14.6 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

CNRResistanceAntibiotic/readMapper
Pipeline with ARIBA tool
  • * requirements.txt

Size: 17.4 MB - Last synced: 7 months ago - Pushed: almost 2 years ago

nci900/AI-ML-Applications-on-Gadi_Computational-Biology
  • ==1.3.9 requirements.txt

Size: 5.39 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

dvolk/catwalk
  • * Pipfile

Size: 27.4 MB - Last synced: 9 months ago - Pushed: almost 2 years ago

daviddaytw/QNet
The offical implementation of QNet.
  • ==1.3.9 Pipfile
  • ==1.3.9 Pipfile.lock
  • ==1.3.9 requirements.txt

Size: 4.15 MB - Last synced: 2 months ago - Pushed: about 1 year ago

Freddsle/BI_2021_Python
For tasks from BI
  • 1.3.2 python_homework/virtual_environment_research_hw/poetry.lock
  • 1.3.2 python_homework/virtual_environment_research_hw/pyproject.toml
  • ==1.3.2 python_homework/virtual_environment_research_hw/requirements.txt

Size: 21.8 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

jiaying2508/LYRUS
  • ==0.4.1 requirements.txt

Size: 1.26 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

lengrigo/BI_2021_Python
  • ==1.3.2 virtual_envitoments/requirements.txt

Size: 57.8 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

Sarhamam/EpitopePrediction
  • * requirements.txt

Size: 19.5 MB - Last synced: 7 months ago - Pushed: over 2 years ago

AnaAGG/stremlit_workshop
  • =0.4.1=pypi_0 requirements.txt

Size: 24.5 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

UhrigLab/DomainViz
This repo is for the creation of a webpage that will hold multiple tools to create a one-stop-shop for accessing the tools created by the UhrigLab and others.
  • * website-glen/Pipfile
  • ==0.1.3 website-glen/Pipfile.lock

Size: 58.8 MB - Last synced: 7 months ago - Pushed: 7 months ago

jessegmeyerlab/positional-SHAP
  • ==0.2.4 python/environment.yml

Size: 32.8 MB - Last synced: about 1 month ago - Pushed: over 2 years ago

lehecht/k-mer-Dash
  • ==0.3.0 requirements.txt

Size: 785 KB - Last synced: 10 months ago - Pushed: over 2 years ago

mkirsche/nCovIllumina
  • ==0.0.1 environment.yml

Size: 22.4 MB - Last synced: 9 months ago - Pushed: about 3 years ago

bilgehicyilmam/Dolphin
  • ==0.2.2 requirement.txt

Size: 252 MB - Last synced: 2 months ago - Pushed: about 3 years ago

Diet-Microbiome-Interactions-Lab/GeneralTools
General Properties of FASTAs
  • * setup.py

Size: 24.5 MB - Last synced: about 14 hours ago - Pushed: about 14 hours ago

Dee-chen/Tree2gd
  • * setup.py

Size: 26 MB - Last synced: 29 days ago - Pushed: over 1 year ago

ahoarfrost/LoL
learning the Language of Life
  • ==0.1.0 TrainLM_Azure/requirements.txt
  • ==0.1.0 requirements.txt

Size: 286 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

FirstHandScientist/classification-EM-GM
Classification experiments of GenMM models
  • ==0.1.0 requirements.txt

Size: 990 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

dmartmillan/rosalind-problems
Some solved problems of ROSALIND
  • ==0.0.1 requirements.txt

Size: 134 KB - Last synced: about 1 month ago - Pushed: about 1 month ago

solislemuslab/bioklustering
BioKlustering: a web app for semi-supervised learning of maximally unbalanced genomic data
  • * BioKlustering-Website/requirements.txt

Size: 36.7 MB - Last synced: 4 days ago - Pushed: about 1 month ago

dlcgold/bact-project
Data science lab in biosciences project on bacterial infections annotated in KEGG
  • ==1.3.9 requirements.txt

Size: 1.4 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago

FriedLabJHU/DomainMapper
DomainMapper is a parser for hmmscan full output files built centrally around ECOD domain definitions. Users can optimize DomainMapper's internal settings with command-line flags for use with other domain definitions.
  • * setup.py

Size: 75.2 MB - Last synced: 5 months ago - Pushed: 5 months ago

brianzou03/DNA-sequencing
DNA Gap Prediction - using scikit-learn models to classify species and resolve gaps in DNA based on species.
  • ==1.3.9 requirements.txt

Size: 43 MB - Last synced: 6 months ago - Pushed: almost 2 years ago

mshobair/RandomForest_hypothesis
Comparing global and local methods in cheminformatics
  • * Pipfile
  • ==0.1.0 Pipfile.lock

Size: 119 KB - Last synced: about 1 year ago - Pushed: over 2 years ago

pengkenlim/LSTrAP-denovo
LSTrAP-denovo is an easy-to-use pipeline to assemble and annotate transcripts for species without genome / genomic annotations using publicly available RNA-seq data.
  • ==1.3.8 setup/requirements.txt

Size: 1.64 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

KazegamiKuon/genhelper
I create some module which can help me real and analysis data output from LDhat
  • ==0.4.1 environment.yml
  • =0.4.1=pypi_0 requirements.txt

Size: 44.9 KB - Last synced: 11 months ago - Pushed: almost 3 years ago

mrubio-chavarria/covidMonitor
A SARS-CoV2 phylogeny monitor
  • ==0.1.0 requirements.txt

Size: 9.77 MB - Last synced: 3 months ago - Pushed: over 1 year ago

pavlovicaleksandar/GI-project
  • ==0.4.1 requirements.txt

Size: 857 KB - Last synced: 10 days ago - Pushed: almost 3 years ago

alexjmartin/ZombieApocalypse
Code Repository for the modelling of a Zombie apocalypse over a number of days
  • ==0.3.0 requirements.txt

Size: 70.3 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

ranjith1894/pubmed_python
  • ==0.1.0 requirements.txt

Size: 12.7 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

huyenma91/ServerWeb
  • ==0.1.9 BiMeta/BimetaCode/requirements.txt

Size: 31.9 MB - Last synced: 9 months ago - Pushed: almost 3 years ago

mokymai/bio
:heavy_check_mark: Automated management of R and RStudio for my courses at Vinlius University (R package)
  • * inst/install-r/pkgs-required-version.txt

Size: 4.7 MB - Last synced: 3 months ago - Pushed: 3 months ago

mrubio-chavarria/biophy
  • ==0.1.0 requirements.txt

Size: 5.86 KB - Last synced: 12 months ago - Pushed: over 1 year ago

BarKetPlace/applied-bioinfo-project
  • ==0.1.0 requirements.txt

Size: 7.53 MB - Last synced: 4 months ago - Pushed: almost 2 years ago

DieStrassen-KTP-EG21/Clinical-Genomics-KTP
This the Repository for Group 2 KTP 2021
  • ==0.7.4 Genome Analyzer/API/requirements.txt

Size: 7.81 MB - Last synced: 26 days ago - Pushed: over 2 years ago

FlorianPix/Collaboration_Network
  • ==1.3.2 requirements.txt

Size: 27.3 MB - Last synced: 30 days ago - Pushed: over 2 years ago

pockerman/hmmtuf_app
hmmtuf is a simple mapping tool that uses hidden Markov models in order to label DNA regions.
  • ==0.0.1 requirements.txt

Size: 17.1 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

mjoh223/phamlite
  • ==1.3.8 data/requirements.txt

Size: 401 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

3vilware/protAPI
Modular to predict proteins folding using openprotein as core based all on API REST
  • ==0.1.0 requirements.txt

Size: 765 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

DiegoCao/streamweb
VE450 Web page
  • ==1.3.9 requirements.txt

Size: 53.6 MB - Last synced: 24 days ago - Pushed: 25 days ago

proteomine_biozentrum/proteomics
  • 1.3.9 poetry.lock

Last synced: over 1 year ago

xialab-ahu/DPProm
  • ==1.3.2 requirements.txt

Size: 109 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

juliacpowell74/gibbs_sampler
  • 1.3.3 final_project/main_program/gibbs_sampler/poetry.lock
  • ^1.3.3 final_project/main_program/gibbs_sampler/pyproject.toml

Size: 123 KB - Last synced: about 1 year ago - Pushed: about 2 years ago

jshleap/TA_pipes
Scripts and pipelines for the manuscript "Assessment of current taxonomic assignment strategies for metabarcoding eukaryotes: Insights from mock communities"
  • ==0.1.0 requirements.txt

Size: 156 KB - Last synced: 9 months ago - Pushed: over 1 year ago

joanmarticarreras/BKTyper
Human polyoma BK (BKPyV) typing tool
  • ==0.1.0 requirements.txt

Size: 67.4 KB - Last synced: 7 months ago - Pushed: 9 months ago

databio/pepatac
A modular, containerized pipeline for ATAC-seq data processing
  • >=0.2.4 requirements.txt

Size: 21.8 MB - Last synced: 22 days ago - Pushed: 4 months ago

MannLabs/structuremap
Python package for investigating the structural context of PTMs
  • ==1.3.3 requirements/requirements.txt

Size: 2.38 MB - Last synced: 13 days ago - Pushed: 4 months ago

takimailto/FunGAPsite-webapp
  • ==0.1.0 requirements.txt

Size: 318 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

proteomics-ip34-21vt/proteomics
  • 1.3.9 poetry.lock

Last synced: over 1 year ago

ctlab/HiCT_Library
Library for interaction with Hi-C contact maps in HDF5 format
  • * requirements.txt
  • * setup.py

Size: 434 KB - Last synced: about 1 month ago - Pushed: 8 months ago

AlexOrlek/sftp_py
Transfer files between remote and local directories using sftp
  • ==0.4.1 requirements.txt

Size: 12.7 KB - Last synced: 7 days ago - Pushed: over 1 year ago

Applied-Genomics-UTD/chip-seq-analysis-jessi-braden-varsha
chip-seq-analysis-jessi-braden-varsha created by GitHub Classroom
  • ==1.3.9 environment.yml

Size: 73.2 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

zjlclimb/git_base
  • * djangoProject5/Pipfile

Size: 308 KB - Last synced: about 1 year ago - Pushed: over 2 years ago

Eitan177/subclone_simplified
  • ==1.3.3 requirements.txt

Size: 478 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

PromoterPredict/PromoterStrengthPredictor
Machine Learning using Multivariate Linear Regression to Predict the Strength of a Promoter
  • ==0.1.0 requirements.txt

Size: 12.2 MB - Last synced: 29 days ago - Pushed: over 1 year ago

haddocking/arctic3d
Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  • 1.5.3 poetry.lock
  • 1.5.3 pyproject.toml

Size: 2.18 MB - Last synced: about 17 hours ago - Pushed: 2 days ago

wenyuhaokikika/FCG
Find Complete Gene
  • ==0.1.0 requirements.txt

Size: 4.52 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

KurtReynolds2000/researchproject
Final year research project - Kurt & Fred
  • ==1.3.2 requirement.txt

Size: 89.8 KB - Last synced: about 1 year ago - Pushed: over 2 years ago

fabianfransen/B8azure6
  • ==0.1.0 requirements.txt

Size: 1.98 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

koualab/conodictor
ConoDictor predicts conopeptides superfamily using generalized profiles and hidden Markov models.
  • 1.4.0 poetry.lock
  • ^1.3.3 pyproject.toml

Size: 90.1 MB - Last synced: 21 days ago - Pushed: 3 months ago

Orpowell/CRISPR-Designer
A tool for designing sgRNAs and repair templates for CRISPR experiments
  • ==1.78 requirements.txt

Size: 1.36 MB - Last synced: 10 months ago - Pushed: about 1 year ago

danhalligan/rosalind.info
Solutions to the bioinformatic coding challenges at rosalind.info
  • 1.4.0 poetry.lock
  • ^1.4.0 pyproject.toml

Size: 477 KB - Last synced: 7 months ago - Pushed: 7 months ago

Damien-Garcia-Bioinformatics/pairwiseGraph
School project in master's degree. Creation of graph based on pairwise distances between nucleic acid sequences
  • ==1.4.0 requirements.txt

Size: 147 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

uodedeoglu/swe573-ulasdedeoglu
Repository for SWE 573 lecture.
  • ==0.5.0 app/mysite/requirements.txt

Last synced: over 1 year ago

IlikeBB/CG-Project
  • ==1.3.3 CG-Covid19-Project/deeplearning_gene_eperiment/environment.yml

Size: 616 MB - Last synced: 25 days ago - Pushed: over 1 year ago

Cadiastands/TP-Bioinformatica
  • * requirements.txt

Size: 73.2 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

moshtachismail/final_blok10
  • * src/requirements.txt

Size: 2.04 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

shraddha.surana/antiviral-peptide-predictions-using-gan
  • * MaliGAN/requirements.txt
  • * MaliGAN_biased_sampling/MaliGAN/requirements.txt

Last synced: over 1 year ago

glygener/glygen-backend-datasetviewer
  • ==1.3.3 api/requirements.txt

Size: 121 MB - Last synced: 8 months ago - Pushed: 8 months ago

phineasng/DECODE
Code Release for the DECODE submission (ISMB2022)
  • ==1.3.3 requirements.txt

Size: 4.53 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

oKoch/pts1-prediction-tool
This project offers a classification-algorithm for predicting the peroxisomal targeting signal 1 (pts1) in a given amino acid sequence (primary structure of a protein)
  • 1.78 Pipfile
  • ==0.4.1 Pipfile.lock
  • * setup.py

Size: 8.54 MB - Last synced: 8 days ago - Pushed: about 3 years ago

BGASM/pyentrez
A terminal-based implementation of biostat tools
  • 0.1.9 poetry.lock
  • ^0.1.9 pyproject.toml
  • ==0.1.9 requirements.txt

Size: 292 KB - Last synced: 4 days ago - Pushed: over 3 years ago