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GitHub / phineasng / DECODE
Code Release for the DECODE submission (ISMB2022)
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/phineasng%2FDECODE
Stars: 3
Forks: 1
Open Issues: 2
License: mit
Language: Jupyter Notebook
Repo Size: 4.53 MB
Dependencies:
147
Created: over 2 years ago
Updated: over 1 year ago
Last pushed: over 1 year ago
Last synced: over 1 year ago
Files
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Readme
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Dependencies
Dockerfile
docker
- python 3.7 build
dev_requirements.txt
pypi
- better-apidoc ==0.3.1 development
- black ==21.5b0 development
- flake8 ==3.9.1 development
- mypy ==0.812 development
- myst-parser ==0.14 development
- pytest ==6.2.4 development
- pytest-cov ==2.11.1 development
- six ==1.16.0 development
- sphinx ==3.5.4 development
- sphinx-autodoc-typehints ==1.12.0 development
- sphinx_rtd_theme ==0.5.2 development
requirements.txt
pypi
- Cython ==0.29.30
- Jinja2 ==3.0.3
- Keras-Preprocessing ==1.1.2
- Markdown ==3.3.6
- Pillow ==8.4.0
- PubChemPy ==1.0.4
- PyMetis ==2020.1
- PyWavelets ==1.2.0
- PyYAML ==6.0
- Pygments ==2.11.2
- QtPy ==2.0.0
- SmilesPE ==0.0.3
- Werkzeug ==2.0.2
- absl-py >=0.15.0
- alibi >=0.7.0
- argcomplete ==2.0.0
- argon2-cffi ==21.3.0
- argon2-cffi-bindings ==21.2.0
- astunparse ==1.6.3
- async-generator ==1.10
- attrs ==21.4.0
- bio ==1.3.3
- biopython ==1.79
- biothings-client ==0.2.6
- bleach ==4.1.0
- blis ==0.7.5
- cached-property ==1.5.2
- cachetools ==4.2.4
- catalogue ==2.0.6
- certifi ==2021.10.8
- cffi ==1.15.0
- charset-normalizer ==2.0.9
- clang ==5.0
- click ==8.0.3
- cycler ==0.11.0
- cymem ==2.0.6
- decorator ==5.1.1
- dill ==0.3.4
- diskcache ==5.3.0
- entrypoints ==0.3
- fastprogress ==1.0.0
- filelock ==3.4.2
- flatbuffers ==1.12
- fonttools ==4.28.3
- gast ==0.4.0
- gensim ==4.1.2
- google-auth ==1.35.0
- google-auth-oauthlib ==0.4.6
- google-pasta ==0.2.0
- grpcio ==1.43.0
- h5py ==3.1.0
- huggingface-hub ==0.2.1
- idna ==3.3
- imageio ==2.13.5
- importlib-metadata ==4.10.0
- importlib-resources ==5.4.0
- ipykernel ==6.6.1
- ipython ==7.31.0
- jedi ==0.18.1
- joblib ==1.1.0
- jsonschema ==4.3.3
- jupyter ==1.0.0
- jupyterlab-widgets ==1.0.2
- kahypar >=1.1.5
- keras ==2.9.0
- kiwisolver ==1.3.2
- langcodes ==3.3.0
- logomaker ==0.8
- matplotlib ==3.5.0
- matplotlib-inline ==0.1.3
- murmurhash ==1.0.6
- mygene ==3.2.2
- nbclient ==0.5.9
- nbconvert ==6.4.0
- nest-asyncio ==1.5.4
- networkx ==2.6.3
- numpy >=1.19
- nwalign3 ==0.1.2
- oauthlib ==3.1.1
- opt-einsum ==3.3.0
- pandas ==1.3.4
- pandocfilters ==1.5.0
- pathy ==0.6.1
- preshed ==3.0.6
- prompt-toolkit ==3.0.24
- protobuf ==3.19.1
- pyasn1 ==0.4.8
- pyasn1-modules ==0.2.8
- pydantic ==1.8.2
- pyfaidx ==0.6.3.1
- pyparsing ==3.0.6
- python-Levenshtein ==0.12.2
- pytz ==2021.3
- qtconsole ==5.2.2
- rdkit-pypi ==2021.9.3
- regex ==2021.11.10
- requests ==2.26.0
- requests-oauthlib ==1.3.0
- rsa ==4.8
- sacremoses ==0.0.46
- scikit-image ==0.18.3
- scikit-learn ==1.0.1
- scikit-learn-extra ==0.2.0
- scipy ==1.7.3
- seaborn ==0.11.2
- selfies ==2.0.0
- setuptools-scm ==6.3.2
- six ==1.15.0
- smart-open ==5.2.1
- spacy ==3.2.1
- spacy-legacy ==3.0.8
- spacy-loggers ==1.0.1
- spacy-lookups-data ==1.0.3
- srsly ==2.4.2
- tensorboard >=2.9.1
- tensorboard-data-server >=0.6.1
- tensorboard-plugin-wit >=1.8.0
- tensorflow >=2.9.1
- tensorflow-estimator >=2.9.0
- termcolor ==1.1.0
- terminado ==0.12.1
- thinc ==8.0.13
- threadpoolctl ==3.0.0
- tifffile ==2021.11.2
- tokenizers ==0.10.3
- tomli ==1.2.2
- tqdm ==4.62.3
- typer ==0.4.0
- typing-extensions ==3.7.4.3
- upfp ==0.0.5
- urllib3 ==1.26.7
- wasabi ==0.9.0
- webencodings ==0.5.1
- widgetsnbextension ==3.5.2
- wrapt ==1.12.1