GitHub / CMU-SAFARI / GenASM
Source code for the software implementations of the GenASM algorithms proposed in our MICRO 2020 paper: Senol Cali et. al., "GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis" at https://people.inf.ethz.ch/omutlu/pub/GenASM-approximate-string-matching-framework-for-genome-analysis_micro20.pdf
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PURL: pkg:github/CMU-SAFARI/GenASM
Stars: 29
Forks: 7
Open issues: 0
License: gpl-3.0
Language: C
Size: 44.9 KB
Dependencies parsed at: Pending
Created at: almost 5 years ago
Updated at: over 1 year ago
Pushed at: over 2 years ago
Last synced at: over 1 year ago
Topics: approximate-string-matching, bitap-algorithm, genome-sequence-analysis, hw-sw-co-design, pre-alignment-filtering, read-alignment, read-mapping