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GitHub / Charis02 / bio_project

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Charis02%2Fbio_project

Stars: 0
Forks: 0
Open Issues: 0

License: None
Language: Python
Repo Size: 71.3 KB
Dependencies: 294

Created: about 1 month ago
Updated: 19 days ago
Last pushed: 19 days ago
Last synced: 19 days ago

Files

Readme

Dependencies

pip_requirements.txt pypi

ConfigArgParse ==1.7
Flask ==2.2.5
GPUtil ==1.4.0
GitPython ==3.1.31
Mako ==1.2.4
PyOpenGL ==3.1.7
PyQt5 ==5.15.9
PyQt5-Qt5 ==5.15.2
PyQt5-sip ==12.11.0
Rtree ==1.2.0
SQLAlchemy ==2.0.12
Werkzeug ==2.2.3
accelerate ==0.27.2
addict ==2.4.0
aiobotocore ==2.12.1
aioitertools ==0.11.0
aiosignal ==1.3.1
alembic ==1.10.4
anndata ==0.10.6
annotated-types ==0.6.0
ansi2html ==1.8.0
appdirs ==1.4.4
aqtp ==0.7.1
array_api_compat ==1.5.1
arrow ==1.2.3
async-timeout ==3.0.1
av ==11.0.0
awscli ==1.32.34
bidict ==0.22.1
bio ==1.6.2
biopython ==1.78
biothings-client ==0.3.1
bitsandbytes ==0.43.1
botocore ==1.34.34
build ==1.0.3
cellxgene-census ==1.10.2
certifi ==2023.5.7
chex ==0.1.86
clarabel ==0.6.0
cmake ==3.25.0
cmeel ==0.53.3
cmeel-assimp ==5.2.5.1
cmeel-boost ==1.82.0
cmeel-console-bridge ==1.0.2.2
cmeel-octomap ==1.9.8.2
cmeel-tinyxml ==2.6.2.2
cmeel-urdfdom ==3.1.0.3
colorama ==0.4.4
colorlog ==6.8.2
comet-ml ==3.37.1
configobj ==5.0.8
cvxpy ==1.4.1
cvxpylayers ==0.1.6
dash ==2.14.0
dash-core-components ==2.0.0
dash-html-components ==2.0.0
dash-table ==5.0.0
databricks-cli ==0.17.6
dataclasses ==0.6
deepspeed ==0.9.2
depthai ==2.25.1.0
descartes ==1.1.0
diffcp ==1.0.23
diffusers ==0.12.1
dill ==0.3.8
distlib ==0.3.6
docker ==6.0.1
docker-pycreds ==0.4.0
docstring-parser ==0.15
docutils ==0.16
dotmap ==1.3.30
dulwich ==0.21.7
ecos ==2.0.12
eigenpy ==3.1.1
einops ==0.7.0
embreex ==2.17.7.post4
et-xmlfile ==1.1.0
everett ==3.1.0
exceptiongroup ==1.2.0
filelock ==3.9.0
fire ==0.5.0
flax ==0.8.2
fqdn ==1.5.1
frozenlist ==1.3.3
fsspec ==2024.3.1
fuzzywuzzy ==0.18.0
fvcore ==0.1.5.post20221221
galore-torch ==1.0
gdown ==4.7.1
get-annotations ==0.1.2
gget ==0.28.4
gitdb ==4.0.10
glob2 ==0.7
gprofiler-official ==1.0.0
greenlet ==2.0.2
grpcio ==1.51.3
gsplat ==0.1.10
gunicorn ==20.1.0
h11 ==0.14.0
h5py ==3.8.0
hjson ==3.1.0
hpp-fcl ==2.3.6
huggingface-hub ==0.20.3
iopath ==0.1.10
ipython-genutils ==0.2.0
isoduration ==20.11.0
itsdangerous ==2.1.2
jax ==0.4.19
jaxtyping ==0.2.25
jmespath ==1.0.1
jsonpointer ==2.0
jupyter-tensorboard ==0.2.0
lightning-utilities ==0.8.0
lit ==15.0.7
llvmlite ==0.42.0
lxml ==5.1.0
mapbox-earcut ==1.0.1
matlabengine ==9.13.5
mediapy ==1.2.0
memory-profiler ==0.61.0
metakernel ==0.29.4
mkl-fft ==1.3.1
mkl-random ==1.2.2
mkl-service ==2.4.0
ml-dtypes ==0.4.0
mlflow ==2.3.1
mpmath ==1.2.1
msgpack ==1.0.8
msgpack-numpy ==0.4.8
multiprocess ==0.70.16
munkres ==1.1.4
mygene ==3.2.2
mysql-connector-python ==8.0.29
natsort ==8.4.0
nbformat ==5.7.0
nerfacc ==0.5.2
nerfstudio ==1.0.3
ninja ==1.11.1
nodeenv ==1.8.0
numba ==0.59.1
numpy ==1.24.0
nuscenes-devkit ==1.1.9
nvidia-cublas-cu12 ==12.4.5.8
nvidia-cuda-cupti-cu12 ==12.4.127
nvidia-cuda-nvcc-cu12 ==12.4.131
nvidia-cuda-nvrtc-cu12 ==12.4.127
nvidia-cuda-runtime-cu12 ==12.4.127
nvidia-cudnn-cu12 ==8.9.7.29
nvidia-cufft-cu12 ==11.2.1.3
nvidia-cusolver-cu12 ==11.6.1.9
nvidia-cusparse-cu12 ==12.3.1.170
nvidia-dlprof ==1.8.0
nvidia-nccl-cu12 ==2.21.5
nvidia-nsys-cli ==2021.3.2.12
nvidia-nvjitlink-cu12 ==12.4.127
nvidia-pyindex ==1.0.9
octave_kernel ==0.35.1
open3d ==0.17.0
opencv-python ==4.8.0.76
openpyxl ==3.0.10
opt-einsum ==3.3.0
optax ==0.2.2
orbax-checkpoint ==0.5.9
osqp ==0.6.3
pandas ==2.1.4
pathos ==0.3.2
peft ==0.9.0
pillow ==10.3.0
pin ==2.6.20
platformdirs ==4.2.0
ply ==3.11
pooch ==1.8.1
portalocker ==2.8.2
pox ==0.3.4
ppft ==1.7.6.8
protobuf ==3.20.3
psycopg2 ==2.9.6
pyarrow ==11.0.0
pyarrow-hotfix ==0.6
pyasn1 ==0.4.8
pyasn1-modules ==0.2.7
pybind11 ==2.11.1
pybullet ==3.2.5
pycocotools ==2.0.7
pycollada ==0.8
pycurl ==7.45.1
pydantic ==1.10.15
pydantic_core ==2.16.3
pyg-lib ==0.2.0
pygame ==2.5.2
pyliblzfse ==0.4.1
pymeshlab ==2023.12.post1
pyngrok ==7.1.0
pynndescent ==0.5.11
pypng ==0.20220715.0
pyproject_hooks ==1.0.0
pyqt5-plugins ==5.15.9.2.3
pyqt5-tools ==5.15.9.3.3
pyquaternion ==0.9.9
pysdf ==0.1.9
python-box ==6.1.0
python-dotenv ==1.0.0
python-engineio ==4.9.0
python-socketio ==5.11.1
pytorch-extension ==0.2
pytorch-lightning ==1.8.6
pytorch-msssim ==1.0.0
qdldl ==0.1.7.post0
qt5-applications ==5.15.2.2.3
qt5-tools ==5.15.2.1.3
querystring-parser ==1.2.4
rawpy ==0.19.0
ray ==2.4.0
rdkit ==2023.9.5
rdkit-pypi ==2022.9.5
regex ==2023.12.25
requests ==2.31.0
requests-toolbelt ==1.0.0
retrying ==1.3.4
rich ==13.7.0
rsa ==4.7.2
s3fs ==2024.3.1
s3transfer ==0.10.0
safetensors ==0.4.1
scanpy ==1.9.6
scikit-learn ==1.3.0
scipy ==1.9.1
scs ==3.2.3
semantic-version ==2.10.0
sentry-sdk ==1.40.0
session_info ==1.0.0
setproctitle ==1.3.3
shapely ==2.0.2
shtab ==1.6.5
simple-websocket ==1.0.0
simplejson ==3.19.2
smmap ==5.0.0
somacore ==1.0.7
spectacularAI ==1.32.0
splines ==0.3.0
sqlparse ==0.4.4
stdlib-list ==0.10.0
subprocess.run ==0.0.8
svg.path ==6.3
sympy ==1.11.1
tabulate ==0.9.0
tensorboard ==2.15.1
tensorboardX ==2.6.2.2
tensorstore ==0.1.56
termcolor ==2.3.0
tiledb ==0.25.1
tiledbsoma ==1.7.2
timm ==0.6.7
tokenizers ==0.15.2
torch ==2.0.0
torch-cluster ==1.6.1
torch-fidelity ==0.3.0
torch-geometric ==2.3.1
torch-scatter ==2.1.1
torch-sparse ==0.6.17
torch-spline-conv ==1.2.2
torch-tb-profiler ==0.4.1
torchaudio ==2.0.1
torchdata ==0.6.0
torchmetrics ==1.3.0.post0
torchtext ==0.15.1
torchtyping ==0.1.4
torchvision ==0.15.1
transformers ==4.38.2
transforms3d ==0.4.1
trimesh ==4.0.0
triton ==2.0.0
typeguard ==2.13.3
typing_extensions ==4.8.0
tyro ==0.7.3
umap-learn ==0.5.5
uri-template ==1.2.0
virtualenv ==20.21.0
viser ==0.1.26
wandb ==0.16.2
webcolors ==1.13
webencodings ==0.5.1
websocket-client ==1.3.3
websockets ==12.0
wrapt ==1.16.0
wsproto ==1.2.0
wurlitzer ==3.0.3
xarray ==2023.4.2
xatlas ==0.0.8
xxhash ==3.4.1
yacs ==0.1.8
yapf ==0.40.2
yourdfpy ==0.0.56
zstandard ==0.19.0