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GitHub / Dartmouth-Data-Analytics-Core / Bioinformatics_workshop_setup
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Forks: 1
Open Issues: 0
License: None
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Repo Size: 106 KB
Dependencies:
141
Created: over 3 years ago
Updated: over 3 years ago
Last pushed: over 3 years ago
Last synced: about 1 year ago
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Dependencies
environment.yml
conda
- _libgcc_mutex 0.1
- _r-mutex 1.0.1
- asn1crypto 0.24.0
- attrs 19.1.0
- bcftools 1.9
- biopython 1.74
- bz2file 0.98
- bzip2 1.0.8
- ca-certificates 2020.6.20
- cairo 1.16.0
- certifi 2020.6.20
- cffi 1.12.3
- chardet 3.0.4
- click 7.0
- colormath 3.0.0
- cryptography 2.7
- curl 7.65.3
- cutadapt 2.4
- cycler 0.10.0
- dbus 1.13.6
- decorator 4.4.0
- deeptools 3.3.0
- deeptoolsintervals 0.1.8
- dnaio 0.3
- expat 2.2.5
- fastqc 0.11.8
- font-ttf-dejavu-sans-mono 2.37
- fontconfig 2.13.1
- freetype 2.10.0
- fribidi 1.0.9
- future 0.17.1
- gettext 0.19.8.1
- glib 2.58.3
- graphite2 1.3.13
- gst-plugins-base 1.14.5
- gstreamer 1.14.5
- harfbuzz 2.4.0
- htseq 0.11.2
- htslib 1.9
- icu 64.2
- idna 2.8
- ipython_genutils 0.2.0
- jinja2 2.10.1
- jpeg 9c
- jsonschema 3.0.2
- jupyter_core 4.4.0
- kiwisolver 1.1.0
- krb5 1.16.3
- libblas 3.8.0
- libcblas 3.8.0
- libcurl 7.65.3
- libdeflate 1.0
- libedit 3.1.20170329
- libffi 3.2.1
- libgcc 7.2.0
- libgcc-ng 9.1.0
- libgfortran-ng 7.3.0
- libiconv 1.15
- liblapack 3.8.0
- libopenblas 0.3.6
- libpng 1.6.37
- libssh2 1.8.2
- libstdcxx-ng 9.1.0
- libtiff 4.1.0
- libuuid 2.32.1
- libwebp-base 1.1.0
- libxcb 1.13
- libxml2 2.9.9
- lz4-c 1.8.3
- lzstring 1.0.4
- markdown 3.1.1
- markupsafe 1.1.1
- matplotlib 3.1.1
- matplotlib-base 3.1.1
- multiqc 1.7
- nbformat 4.4.0
- ncurses 6.1
- networkx 2.3
- numpy 1.16.4
- openblas 0.3.6
- openjdk 11.0.1
- openssl 1.1.1g
- pango 1.42.4
- pcre 8.41
- perl 5.26.2
- picard 2.23.1
- pigz 2.3.4
- pip 19.2.1
- pixman 0.38.0
- plotly 4.1.0
- pthread-stubs 0.4
- py2bit 0.3.0
- pybigwig 0.3.16
- pycparser 2.19
- pyopenssl 19.0.0
- pyparsing 2.4.1.1
- pyqt 5.9.2
- pyrsistent 0.15.4
- pysam 0.15.2
- pysocks 1.7.0
- python 3.7.3
- python-dateutil 2.8.0
- python_abi 3.7
- pytz 2019.2
- pyyaml 5.1.2
- qt 5.9.7
- r-base 3.2.2
- readline 8.0
- requests 2.22.0
- retrying 1.3.3
- samtools 1.9
- scipy 1.3.0
- seqtk 1.3
- setuptools 41.0.1
- simplejson 3.16.0
- sip 4.19.8
- six 1.12.0
- spectra 0.0.11
- sqlite 3.29.0
- star 2.7.2b
- tk 8.6.9
- tornado 6.0.3
- traitlets 4.3.2
- urllib3 1.25.3
- wheel 0.33.4
- xopen 0.7.3
- xorg-kbproto 1.0.7
- xorg-libice 1.0.10
- xorg-libsm 1.2.3
- xorg-libx11 1.6.9
- xorg-libxau 1.0.9
- xorg-libxdmcp 1.1.3
- xorg-libxext 1.3.4
- xorg-libxrender 0.9.10
- xorg-renderproto 0.11.1
- xorg-xextproto 7.3.0
- xorg-xproto 7.0.31
- xz 5.2.4
- yaml 0.1.7
- zlib 1.2.11
- zstd 1.4.4