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GitHub / DigBioLab / ExpoSeq
ExpoSeq is a pipeline to process and analyze in various visualizations ngs data from phage display campaigns
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DigBioLab%2FExpoSeq
Stars: 2
Forks: 1
Open Issues: 0
License: agpl-3.0
Language: HTML
Repo Size: 167 MB
Dependencies:
12
Created: almost 2 years ago
Updated: 3 months ago
Last pushed: 3 months ago
Last synced: 3 months ago
Topics: antibody-sequencing, clustering, high-throughput-sequencing, ngs-pipeline, phage-display, rnaseq
Files
Dependencies
- PyQt5 ==5.15.7
- biopython ==1.80
- editdistance ==0.6.2
- logomaker ==0.8
- matplotlib >=3.6.3
- networkx ==2.6.3
- numpy >=1.23.5
- pandas >=1.5.3
- scikit-learn >=1.2.1
- scipy >=1.10.0
- seaborn >=0.12.2
- sgt >=2.0.3