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GitHub / ElementoLab / imc
A package for the analysis of Imaging Mass Cytometry data
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ElementoLab%2Fimc
Stars: 11
Forks: 5
Open Issues: 8
License: None
Language: Python
Repo Size: 20.5 MB
Dependencies:
71
Created: almost 4 years ago
Updated: about 1 month ago
Last pushed: 6 months ago
Last synced: 12 days ago
Files
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Readme
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Dependencies
pyproject.toml
pypi
- Sphinx ^3.1.1 develop
- black ^19.10b0 develop
- git-lint ^0.1.2 develop
- ipython ^7.16.1 develop
- mypy ^0.900 develop
- pylint ^2.5.3 develop
- pytest ^5.4.3 develop
- sphinx-issues ^1.2.0 develop
- sphinx-rtd-theme ^0.5.0 develop
- PyYAML ^5.4.1
- anndata ^0.7.3
- colorama ^0.4.3
- h5py ^2.10.0
- imagecodecs ^2020.5.30
- imctools ^2.1.0
- joblib ^0.15.1
- leidenalg ^0.8.1
- networkx ^2.4
- ordered-set ^4.0.2
- pandas >=1.0.1
- parmap ^1.5.2
- python ^3.8
- python-louvain ^0.14
- scanpy ^1.5.1
- tifffile >=2022.5.4
.github/workflows/test.yml
actions
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- cellpose >=0.1.0.1,<1.0.0
- DeepCell >=0.8.3,<1.0.0
- black * development
- flake8 * development
- git-lint * development
- ipython * development
- mypy >=0.900 development
- pandas-stubs * development
- pydocstyle * development
- pylint * development
- pytest >=6 development
- pytest-cov * development
- rich * development
- wheel * development
- stardist ==0.6.0,<1.0.0
- PyYAML *
- bbknn *
- harmonypy *
- imctools >=2.1.0
- joblib *
- leidenalg *
- matplotlib >=3.5
- networkx *
- numpy *
- numpy_groupies *
- ordered-set *
- outdated *
- pandas >=1.0.1
- parmap *
- python-louvain *
- scanpy *
- scikit-image ==0.17.2
- scipy >=1.7
- seaborn-extensions *
- setuptools_scm *
- tifffile ==2022.4.8
- tqdm *