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GitHub / GenSpectrum / LAPIS

An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GenSpectrum%2FLAPIS

Stars: 15
Forks: 3
Open Issues: 41

License: agpl-3.0
Language: Java
Repo Size: 9.91 MB
Dependencies: 159

Created: almost 3 years ago
Updated: 12 days ago
Last pushed: 12 days ago
Last synced: 12 days ago

Topics: covid-19, epidemiology, genomics, research, sars-cov-2

Files

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Readme

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Dependencies

server/Dockerfile docker

openjdk 17 build
openjdk 17-bullseye build

server/build.gradle maven

com.github.luben:zstd-jni 1.5.0-4 implementation
com.googlecode.json-simple:json-simple 1.1.1 implementation
com.mchange:c3p0 0.9.5.5 implementation
commons-io:commons-io 2.11.0 implementation
javax.xml.bind:jaxb-api 2.4.0-b180830.0359 implementation
org.antlr:antlr4-runtime 4.9.3 implementation
org.apache.commons:commons-csv 1.8 implementation
org.apache.commons:commons-text 1.9 implementation
org.javatuples:javatuples 1.2 implementation
org.jooq:jooq 3.14.8 implementation
org.postgresql:postgresql 42.3.1 implementation
org.simplejavamail:simple-java-mail 6.6.1 implementation
org.springframework.boot:spring-boot-starter-web * implementation
org.tukaani:xz 1.9 implementation
org.yaml:snakeyaml 1.29 implementation
redis.clients:jedis 3.7.0 implementation
org.junit.jupiter:junit-jupiter-engine * testImplementation
org.junit.jupiter:junit-jupiter-params * testImplementation

api-tests/package.json npm

ajv ^8.6.3 development
chai ^4.3.4 development
mocha ^9.1.2 development
supertest ^6.1.6 development

.github/workflows/docs_docker.yaml actions

actions/checkout v3 composite

.github/workflows/server_docker.yml actions

actions/checkout v3 composite

.github/workflows/swagger_docker.yaml actions

actions/checkout v3 composite

.github/workflows/test.yml actions

actions/checkout v3 composite
actions/setup-java v3 composite
gradle/gradle-build-action v2 composite
gradle/wrapper-validation-action 55e685c48d84285a5b0418cd094606e199cca3b6 composite

docker-compose/docker-compose.yml docker

ghcr.io/cevo-public/lapis-docs public
ghcr.io/cevo-public/lapis-server public
redis 6

docs/openapi_spec/Dockerfile docker

debian bullseye build
nginx stable build

docs/slate/Dockerfile docker

nginx stable build
ruby 3-buster build

api-tests/package-lock.json npm

121 dependencies