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GitHub / ISA-tools / BioInvIndex

The web application, model, database persistence, services package and web services for the BII. Led by Eamonn Maguire (Uni. of Oxford) & Philippe Rocca-Serra (Uni. of Oxford).

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ISA-tools%2FBioInvIndex

Stars: 15
Forks: 13
Open Issues: 12

License: None
Language: Java
Repo Size: 1.71 MB
Dependencies: 202

Created: over 13 years ago
Updated: about 2 years ago
Last pushed: about 2 years ago
Last synced: 29 days ago

Files

Readme

Dependencies

ear/pom.xml maven

com.h2database:h2
com.oracle:ojdbc5 11.1.0.7.0
commons-beanutils:commons-beanutils
commons-digester:commons-digester
mysql:mysql-connector-java 5.1.6
org.apache.lucene:lucene-core
org.apache.lucene:lucene-highlighter
org.apache.lucene:lucene-memory
org.apache.lucene:lucene-misc
org.apache.lucene:lucene-queries
org.apache.lucene:lucene-snowball
org.apache.lucene:lucene-spatial
org.apache.lucene:lucene-spellchecker
org.apache.solr:solr-core
org.apache.solr:solr-solrj
org.hibernate:hibernate-annotations
org.hibernate:hibernate-commons-annotations
org.hibernate:hibernate-core
org.hibernate:hibernate-entitymanager
org.hibernate:hibernate-search
org.hibernate:hibernate-validator
org.jboss.el:jboss-el
org.jboss.seam:jboss-seam
org.jbpm:jbpm-jpdl
org.richfaces.framework:richfaces-api
org.slf4j:slf4j-log4j12
postgresql:postgresql 8.4-701.jdbc3
uk.ac.ebi.bioinvindex:model ${bii.version}
uk.ac.ebi.bioinvindex:services ${bii.version}
uk.ac.ebi.bioinvindex:web ${bii.version}
uk.ac.ebi.bioinvindex:webservices ${bii.version}
uk.ac.ebi:jutils 1.4

model/pom.xml maven

antlr:antlr provided
org.hibernate:hibernate-annotations provided
org.hibernate:hibernate-commons-annotations provided
org.hibernate:hibernate-core provided
org.hibernate:hibernate-search provided
org.hibernate:hibernate-validator provided
commons-beanutils:commons-beanutils
commons-io:commons-io 2.0.1
commons-lang:commons-lang
mysql:mysql-connector-java 5.1.6
net.sf.opencsv:opencsv 2.1
org.apache.lucene:lucene-core
org.apache.lucene:lucene-misc
org.apache.lucene:lucene-queries
uk.ac.ebi:jutils 1.4
cglib:cglib 2.2 test
junit:junit test
org.dbunit:dbunit test
uk.ac.ebi.bioinvindex:test_utils ${bii.version} test

pom.xml maven

com.h2database:h2 provided
com.thoughtworks.xstream:xstream provided
commons-collections:commons-collections provided
commons-logging:commons-logging provided
javax.ejb:ejb-api provided
javax.el:el-api provided
javax.faces:jsf-api provided
javax.faces:jsf-impl provided
javax.jms:jms provided
javax.persistence:persistence-api provided
javax.servlet:servlet-api provided
javax.transaction:jta provided
log4j:log4j provided
org.apache.lucene:lucene-core provided
org.drools:drools-api provided
org.drools:drools-compiler provided
org.drools:drools-core provided
org.drools:drools-decisiontables provided
org.drools:drools-templates provided
org.hibernate:hibernate-annotations provided
org.hibernate:hibernate-commons-annotations provided
org.hibernate:hibernate-core provided
org.hibernate:hibernate-search provided
org.hibernate:hibernate-validator provided
org.jboss.el:jboss-el provided
org.jboss.seam:jboss-seam provided
org.jbpm:jbpm-jpdl provided
org.richfaces.framework:richfaces-api provided
xpp3:xpp3_min provided
cglib:cglib-nodep 2.2
com.google.guava:guava r07
com.h2database:h2 [2.1.210,)
commons-beanutils:commons-beanutils 1.9.2
commons-beanutils:commons-beanutils-core 1.9.2
commons-cli:commons-cli 1.2
commons-collections:commons-collections 3.2.1
commons-configuration:commons-configuration 1.6
commons-digester:commons-digester 1.8.1
commons-lang:commons-lang 2.4
hibernate-annotations:hibernate-annotations 3.4.0.GA
jboss:jboss-cache 1.4.1.SP9
junit:junit 4.13.1
mysql:mysql-connector-java 5.1.14
org.antlr:antlr 3.3
org.antlr:antlr-runtime 3.3
org.apache.ant:ant 1.9.15
org.apache.ant:ant-antlr 1.9.15
org.apache.lucene:lucene-core 2.9.2
org.apache.lucene:lucene-highlighter 2.9.2
org.apache.lucene:lucene-memory 2.9.2
org.apache.lucene:lucene-misc 2.9.2
org.apache.lucene:lucene-queries 2.9.2
org.apache.lucene:lucene-snowball 2.9.2
org.apache.lucene:lucene-spatial 2.9.2
org.apache.lucene:lucene-spellchecker 2.9.2
org.apache.openejb:javaee-api 5.0-3
org.apache.openejb:openejb-core 3.1.4
org.apache.solr:solr-core 1.4.0
org.apache.solr:solr-solrj 1.4.0
org.codehaus.groovy:groovy-all 1.7.2
org.dbunit:dbunit 2.4.3
org.drools:drools-api ${version.drools}
org.drools:drools-core ${version.drools}
org.hamcrest:hamcrest-core 1.2.1
org.hibernate:hibernate-commons-annotations 3.3.0.ga
org.hibernate:hibernate-core [5.4.24.Final,)
org.hibernate:hibernate-entitymanager 3.4.0.GA
org.hibernate:hibernate-search [5.4.24.Final,)
org.hsqldb:hsqldb 2.0.0
org.jboss.el:jboss-el 1.0_02.CR5
org.jboss.resteasy:resteasy-jaxb-provider ${version.resteasy}
org.jboss.resteasy:resteasy-jaxrs ${version.resteasy}
org.jboss.seam:jboss-seam 2.2.1.Final
org.jboss.seam:jboss-seam-debug 2.2.1.Final
org.jboss.seam:jboss-seam-excel 2.2.1.Final
org.jboss.seam:jboss-seam-ioc 2.2.1.Final
org.jboss.seam:jboss-seam-jul 2.2.1.Final
org.jboss.seam:jboss-seam-mail 2.2.1.Final
org.jboss.seam:jboss-seam-pdf 2.2.1.Final
org.jboss.seam:jboss-seam-remoting 2.2.1.Final
org.jboss.seam:jboss-seam-resteasy 2.2.1.Final
org.jboss.seam:jboss-seam-ui 2.2.1.Final
org.jbpm:jbpm-jpdl 3.2.2
org.mockito:mockito-all 1.8.5
org.mockito:mockito-core 1.8.5
org.objenesis:objenesis 1.2
org.powermock:powermock-api-mockito 1.4.7
org.richfaces.framework:richfaces-api 3.3.3.Final
org.richfaces.framework:richfaces-impl 3.3.3.Final
org.richfaces.samples:darkX 3.3.3.Final
org.richfaces.samples:glassX 3.3.3.Final
org.richfaces.ui:richfaces-ui 3.3.3.Final
org.spockframework:spock-core 0.5-groovy-1.7
org.testng:testng 5.14.1
org.tuckey:urlrewritefilter 3.1.0
uk.ac.ebi.bioinvindex:model 1.6
uk.ac.ebi.bioinvindex:services 1.6
uk.ac.ebi.bioinvindex:web 1.6
uk.ac.ebi.bioinvindex:webservices 1.6
javassist:javassist test
org.powermock:powermock-module-junit4 1.4.7 test
org.powermock:powermock-module-testng 1.4.7 test
org.slf4j:slf4j-log4j12 test

services/pom.xml maven

javax.ejb:ejb-api provided
javax.faces:jsf-api provided
org.hibernate:hibernate-validator provided
org.jboss.seam:jboss-seam provided
uk.ac.ebi.bioinvindex:model ${bii.version} provided
uk.ac.ebi:jutils 1.4
junit:junit test

test_utils/pom.xml maven

web/pom.xml maven

javax.faces:jsf-api 1.2_12 provided
javax.faces:jsf-impl 1.2_13 provided
javax.servlet.jsp:jsp-api 2.1 provided
javax.servlet:jstl 1.0 provided
javax.servlet:servlet-api 2.5 provided
org.jboss.seam:jboss-seam provided
uk.ac.ebi.bioinvindex:model ${bii.version} provided
com.sun.facelets:jsf-facelets
org.jboss.seam:jboss-seam-debug
org.jboss.seam:jboss-seam-ioc
org.jboss.seam:jboss-seam-mail
org.jboss.seam:jboss-seam-pdf
org.jboss.seam:jboss-seam-ui
org.richfaces.framework:richfaces-api
org.richfaces.framework:richfaces-impl
org.richfaces.ui:richfaces-ui
junit:junit test

webservices/pom.xml maven

com.sun.xml.bind:jaxb-impl 2.0 provided
com.sun.xml.bind:jaxb-xjc 2.0 provided
com.sun.xml.messaging.saaj:saaj-impl 1.3 provided
com.sun.xml.stream:sjsxp 1.0 provided
com.sun.xml.ws:jaxws-rt 2.1.4 provided
com.sun.xml.ws:jaxws-tools 2.1.4 provided
javax.annotation:jsr250-api 1.0 provided
javax.jws:jsr181-api 1.0-MR1 provided
javax.xml.bind:jaxb-api 2.1 provided
javax.xml.soap:saaj-api 1.3 provided
javax.xml.ws:jaxws-api 2.0 provided
org.jboss.seam:jboss-seam provided
uk.ac.ebi.bioinvindex:model ${bii.version} provided
junit:junit 4.2
org.hibernate:hibernate-validator