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GitHub / KarchinLab / probabilistic2020

Simulates somatic mutations, and calls statistically significant oncogenes and tumor suppressor genes based on a randomization-based test

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/KarchinLab%2Fprobabilistic2020

Stars: 8
Forks: 5
Open Issues: 4

License: apache-2.0
Language: Python
Repo Size: 5.47 MB
Dependencies: 12

Created: about 8 years ago
Updated: 2 months ago
Last pushed: 11 months ago
Last synced: about 1 month ago

Topics: bioinformatics, cancer, driver-genes, oncogene, somatic-variants, tumor-suppressor-gene

Files
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    Readme
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    Dependencies
    • numpy ==1.10.4 development
    • pandas ==0.17.0 development
    • pysam ==0.8.4 development
    • scipy ==0.14.1 development