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GitHub / LieberInstitute / spatialLIBD
Code for the spatialLIBD R/Bioconductor package and shiny app
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LieberInstitute%2FspatialLIBD
Stars: 72
Forks: 15
Open Issues: 25
License: None
Language: R
Repo Size: 187 MB
Dependencies:
53
Created: over 4 years ago
Updated: 7 days ago
Last pushed: 8 days ago
Last synced: 7 days ago
Topics: 10xgenomics, bioconductor, golem, rstats, shiny, spatial-transcriptomics, spatialexperiment, visium
Files
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Readme
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Dependencies
DESCRIPTION
cran
- R >= 3.6 depends
- SpatialExperiment >= 1.3.3 depends
- AnnotationHub * imports
- BiocFileCache * imports
- BiocGenerics * imports
- DT * imports
- ExperimentHub * imports
- GenomicRanges * imports
- IRanges * imports
- Matrix * imports
- RColorBrewer * imports
- S4Vectors * imports
- SingleCellExperiment * imports
- SummarizedExperiment * imports
- benchmarkme * imports
- cowplot * imports
- fields * imports
- ggplot2 * imports
- golem * imports
- grDevices * imports
- graphics * imports
- grid * imports
- jsonlite * imports
- magick * imports
- methods * imports
- paletteer * imports
- plotly * imports
- png * imports
- rtracklayer * imports
- scater * imports
- sessioninfo * imports
- shiny * imports
- shinyWidgets * imports
- stats * imports
- tibble * imports
- utils * imports
- viridisLite * imports
- BiocManager * suggests
- BiocStyle * suggests
- RefManageR * suggests
- covr * suggests
- here * suggests
- knitr * suggests
- lobstr * suggests
- rmarkdown * suggests
- testthat >= 2.1.0 suggests
.github/workflows/check-bioc.yml
actions
- JamesIves/github-pages-deploy-action releases/v4 composite
- actions/cache v3 composite
- actions/checkout v3 composite
- actions/upload-artifact master composite
- docker/build-push-action v1 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite