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GitHub / LinkageIO / Camoco

Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LinkageIO%2FCamoco

Stars: 40
Forks: 30
Open Issues: 15

License: mit
Language: Python
Repo Size: 125 MB
Dependencies: 38

Created: over 10 years ago
Updated: 12 months ago
Last pushed: 10 months ago
Last synced: 21 days ago

Commit Stats

Commits: 1546
Authors: 17
Mean commits per author: 90.94
Development Distribution Score: 0.372
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/LinkageIO/Camoco

Topics: analysis, cli, gene, python

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Dependencies

requirements.txt pypi

Cython >=0.22.1
ipdb >=0.8
ipython >=3.1.0
matplotlib >=1.4.3
networkx ==1.10
nose >=1.3.6
numexpr >=2.4.3
numpy >=1.9.2
pandas >=0.17.1
patsy >=0.3.0
pyaml >=15.6.3
pyparsing >=2.0.3
python-dateutil >=2.4.2
pytz >=2015.2
scipy >=0.16.0
six >=1.9.0
statsmodels >=0.6.1
termcolor >=1.1.0

setup.py pypi

bcolz >=1.2.1
blaze >=0.10.1
cython >=0.29.10
fa2 >=0.3.5
fastcluster >=1.1.25
flask ==1.0.3
igraph ==0.1.11
markov-clustering >=0.0.6.dev0
matplotlib >=3.1.0
minus80 >=1.0.0
numpy >=1.16.4
odo >=0.5.0
pandas ==0.23.4
powerlaw >=1.4.6
psutil >=5.6.3
pyyaml >=5.1.1
scikit-learn >=0.21.2
scipy >=1.2.1
statsmodels >=0.8.0
termcolor >=1.1.0