GitHub / MarioniLab / sarlacc
The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, clusters reads and produces a consensus sequence for each cluster after multiple sequence alignment.
JSON API: http://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MarioniLab%2Fsarlacc
PURL: pkg:github/MarioniLab/sarlacc
Stars: 13
Forks: 5
Open issues: 2
License: None
Language: R
Size: 534 KB
Dependencies parsed at: Pending
Created at: almost 8 years ago
Updated at: almost 2 years ago
Pushed at: over 6 years ago
Last synced at: 4 months ago
Topics: consensus-clustering, fastq, nanopore, r, rna-seq, sequencing, umi