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GitHub / MatthiasZepper / tools

Python package with helper tools for the nf-core community.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MatthiasZepper%2Ftools

Fork of nf-core/tools
Stars: 0
Forks: 0
Open Issues: 0

License: mit
Language: Python
Repo Size: 19.1 MB
Dependencies: 81

Created: over 2 years ago
Updated: about 2 years ago
Last pushed: about 2 months ago
Last synced: about 2 months ago

Files

Readme

Dependencies

.github/workflows/branch.yml actions

mshick/add-pr-comment v1 composite

.github/workflows/create-lint-wf.yml actions

actions/checkout v2 composite
actions/setup-node v2 composite
actions/setup-python v3 composite
actions/upload-artifact v2 composite
nf-core/setup-nextflow v1 composite

.github/workflows/create-test-wf.yml actions

actions/checkout v2 composite
actions/setup-python v3 composite
actions/upload-artifact v2 composite
nf-core/setup-nextflow v1 composite

.github/workflows/deploy-pypi.yml actions

actions/checkout v2 composite
actions/setup-python v3 composite
pypa/gh-action-pypi-publish release/v1 composite

.github/workflows/fix-linting.yml actions

actions/checkout v3 composite
actions/setup-node v2 composite
actions/setup-python v2 composite
isort/isort-action v0.1.0 composite
psf/black stable composite

.github/workflows/lint-code.yml actions

actions/checkout v2 composite
actions/setup-node v2 composite
actions/setup-python v2 composite
isort/isort-action v0.1.0 composite
mshick/add-pr-comment v1 composite
psf/black stable composite

.github/workflows/push_dockerhub_dev.yml actions

actions/checkout v2 composite

.github/workflows/push_dockerhub_release.yml actions

actions/checkout v2 composite

.github/workflows/pytest.yml actions

actions/checkout v2 composite
actions/setup-python v3 composite
codecov/codecov-action v1 composite
nf-core/setup-nextflow v1 composite

.github/workflows/rich-codex.yml actions

actions/checkout v3 composite
actions/setup-python v3 composite
ewels/rich-codex v1 composite
nf-core/setup-nextflow v1 composite

.github/workflows/sync.yml actions

actions/checkout v2 composite
actions/setup-python v3 composite
actions/upload-artifact v2 composite
nf-core/setup-nextflow v1 composite

.github/workflows/tools-api-docs-dev.yml actions

SamKirkland/FTP-Deploy-Action 4.0.0 composite
actions/checkout v2 composite
actions/setup-python v3 composite

.github/workflows/tools-api-docs-release.yml actions

SamKirkland/FTP-Deploy-Action 4.0.0 composite
actions/checkout v2 composite
actions/setup-python v3 composite

Dockerfile docker

python 3.8.9-slim build

docs/api/requirements.txt pypi

requirements-dev.txt pypi

Sphinx * development
black * development
isort * development
myst_parser * development
pre-commit * development
pytest-cov * development
pytest-datafiles * development
sphinx_rtd_theme * development

requirements.txt pypi

GitPython *
click *
galaxy-tool-util *
jinja2 *
jsonschema >=3.0
markdown >=3.3
packaging *
prompt_toolkit >=3.0.3
pytest >=7.0.0
pytest-workflow >=1.6.0
pyyaml *
questionary >=1.8.0
refgenie *
requests *
requests_cache *
rich >=10.7.0
rich-click >=1.0.0
tabulate *

.github/workflows/clean-up.yml actions

actions/stale v7 composite

.github/workflows/create-test-lint-wf-template.yml actions

actions/checkout v3 composite
actions/setup-node v3 composite
actions/setup-python v4 composite
actions/upload-artifact v3 composite
nf-core/setup-nextflow v1 composite

nf_core/module-template/modules/meta.yml cpan

nf_core/pipeline-template/modules/nf-core/custom/dumpsoftwareversions/meta.yml cpan

nf_core/pipeline-template/modules/nf-core/fastqc/meta.yml cpan

nf_core/pipeline-template/modules/nf-core/multiqc/meta.yml cpan

nf_core/subworkflow-template/subworkflows/meta.yml cpan

nf_core/pipeline-template/pyproject.toml pypi

pyproject.toml pypi

setup.py pypi