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GitHub / ParkerLab / ataqv-2019
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ParkerLab%2Fataqv-2019
Stars: 1
Forks: 0
Open Issues: 0
License: None
Language: Python
Repo Size: 2.54 MB
Dependencies:
25
Created: about 5 years ago
Updated: 11 months ago
Last pushed: over 4 years ago
Last synced: 11 months ago
Files
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Dependencies
environment.yml
conda
- bedtools 2.27.1.*
- bioconductor-genomicranges 1.34.0.*
- bioconductor-ggbio
- bwa 0.7.15.*
- fastqc 0.11.5.*
- fastx-toolkit 0.0.14.*
- macs2 2.1.1.20160309.*
- picard
- pybedtools 0.8.0.*
- pysam
- python 2.7.*
- r 3.5.1.*
- r-biocmanager
- r-dplyr
- r-ggplot2 3.1.0.*
- r-ggrepel 0.8.0.*
- r-glue 1.3.0.*
- r-knitr
- r-mass 7.3-50.*
- r-optparse 1.6.0.*
- r-rcolorbrewer
- r-tidyr 0.8.2.*
- r-viridis
- samtools 1.7.*
- sra-tools 2.8.1.*