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GitHub / PyMassSpec / PyMassSpec

Python Toolkit for Mass Spectrometry

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PyMassSpec%2FPyMassSpec

Fork of ma-bio21/pyms
Stars: 31
Forks: 11
Open Issues: 8

License: gpl-2.0
Language: Python
Repo Size: 72.6 MB
Dependencies: 82

Created: over 5 years ago
Updated: 3 days ago
Last pushed: 3 days ago
Last synced: 3 days ago

Commit Stats

Commits: 448
Authors: 8
Mean commits per author: 56.0
Development Distribution Score: 0.129
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/PyMassSpec/PyMassSpec

Topics: chemistry, mass-spectrometry, python, python3

Funding links: https://github.com/sponsors/domdfcoding

Files

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Readme

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Dependencies

.github/workflows/conda_ci.yml actions

actions/checkout v3 composite
actions/setup-python v4 composite
conda-incubator/setup-miniconda v2 composite

.github/workflows/docs_test_action.yml actions

actions/checkout v3 composite
dorny/paths-filter v2 composite
sphinx-toolbox/sphinx-action sphinx-3.3.1 composite

.github/workflows/flake8.yml actions

actions/checkout v3 composite
actions/setup-python v4 composite
dorny/paths-filter v2 composite

.github/workflows/mypy.yml actions

actions/checkout v3 composite
actions/setup-python v4 composite
dorny/paths-filter v2 composite

.github/workflows/notebooks.yml actions

actions/checkout v3 composite
actions/setup-python v4 composite

.github/workflows/octocheese.yml actions

domdfcoding/octocheese master composite

.github/workflows/python_ci.yml actions

actions/checkout v3 composite
actions/setup-python v4 composite
actions/upload-artifact v3 composite
dorny/paths-filter v2 composite

.github/workflows/python_ci_linux.yml actions

actions/checkout v3 composite
actions/download-artifact v3 composite
actions/setup-python v4 composite
actions/upload-artifact v3 composite
conda-incubator/setup-miniconda v2 composite
dorny/paths-filter v2 composite
pypa/gh-action-pypi-publish v1.4.2 composite

.github/workflows/python_ci_macos.yml actions

actions/checkout v3 composite
actions/setup-python v4 composite
actions/upload-artifact v3 composite
dorny/paths-filter v2 composite

doc-source/requirements.txt pypi

default-values >=0.5.0
domdf-sphinx-theme >=0.3.0
extras-require >=0.2.0
html-section >=0.1.0
jupyter >=1.0.0
nbconvert >=6.0.7
nbsphinx >=0.7.1
pillow >=6.0.0
pypandoc >=1.5
seed-intersphinx-mapping >=0.3.1
sphinx >=3.0.3
sphinx-copybutton >=0.2.12
sphinx-debuginfo >=0.1.0
sphinx-licenseinfo >=0.1.1
sphinx-notfound-page >=0.7.1
sphinx-prompt >=1.1.0
sphinx-pyproject >=0.1.0
sphinx-tabs >=1.1.13
sphinx-toolbox >=2.13.0
sphinxcontrib-httpdomain >=1.7.0
sphinxemoji >=0.1.6
toctree-plus >=0.5.0

pyproject.toml pypi

requirements.txt pypi

biopython >=1.74
cftime <=1.3.0
deprecation >=2.1.0
domdf-python-tools >=1.7.0
enum-tools >=0.6.1
matplotlib ==3.2.2
matplotlib <3.4.0,>=3.0.2
netcdf4 >=1.5.0
numpy >=1.19.2
numpy *
openpyxl >=2.6.2
pandas >=1.0.0
pymzml >=2.2.1
scipy >=1.2.1
sdjson >=0.3.0
typing-extensions >=3.7.4.3

setup.py pypi

tests/requirements.txt pypi

coincidence >=0.2.0 test
coverage >=5.1 test
coverage-pyver-pragma >=0.2.1 test
coveralls >=2.1.2 test
importlib-metadata >=3.6.0 test
iniconfig * test
pytest >=6.0.0 test
pytest-cov >=2.8.1 test
pytest-mpl >=0.11 test
pytest-randomly >=3.7.0 test
pytest-regressions >=2.0.1 test
pytest-rerunfailures >=9.0 test
pytest-timeout >=1.4.2 test
pytz >=2019.1 test