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GitHub / RPdavies / powsimR
Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.
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Fork of bvieth/powsimR
Stars: 0
Forks: 0
Open Issues: 0
License: artistic-2.0
Language:
Repo Size: 74 MB
Dependencies:
87
Created: about 4 years ago
Updated: 8 months ago
Last pushed: over 4 years ago
Last synced: 8 months ago
Files
Dependencies
- R >= 3.6 depends
- gamlss.dist * depends
- BPSC * imports
- BiocGenerics * imports
- BiocParallel * imports
- DECENT * imports
- DEDS * imports
- DESeq2 * imports
- DrImpute * imports
- EBSeq * imports
- Hmisc * imports
- IHW * imports
- Linnorm * imports
- MASS * imports
- MAST * imports
- Matrix * imports
- NBPSeq * imports
- NOISeq * imports
- ROTS * imports
- RUVSeq * imports
- Rmagic * imports
- Rtsne * imports
- S4Vectors * imports
- SAVER * imports
- SCnorm * imports
- Seurat * imports
- SingleCellExperiment * imports
- SummarizedExperiment * imports
- VGAM * imports
- ZIM * imports
- bayNorm * imports
- baySeq * imports
- broom * imports
- cobs * imports
- cowplot * imports
- data.table * imports
- doParallel * imports
- dplyr * imports
- edgeR * imports
- fastICA * imports
- fitdistrplus * imports
- foreach * imports
- future * imports
- ggplot2 * imports
- ggpubr * imports
- ggstance * imports
- grDevices * imports
- grid * imports
- iCOBRA * imports
- kernlab * imports
- limma * imports
- magrittr * imports
- matrixStats * imports
- methods * imports
- minpack.lm * imports
- moments * imports
- monocle * imports
- msir * imports
- nonnest2 * imports
- parallel * imports
- penalized * imports
- plotrix * imports
- plyr * imports
- pscl * imports
- qvalue * imports
- reshape2 * imports
- rlang * imports
- rsvd * imports
- scDD * imports
- scales * imports
- scater * imports
- scde * imports
- scone * imports
- scran * imports
- sctransform * imports
- stats * imports
- tibble * imports
- tidyr * imports
- truncnorm * imports
- utils * imports
- zinbwave * imports
- zingeR * imports
- zoo * imports
- MBESS * suggests
- knitr * suggests
- mvtnorm * suggests
- rmdformats * suggests