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GitHub / Shelnutt2 / TileDB-SOMA
Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Shelnutt2%2FTileDB-SOMA
Fork of single-cell-data/TileDB-SOMA
Stars: 0
Forks: 0
Open Issues: 0
License: mit
Language: Python
Repo Size: 220 MB
Dependencies:
89
Created: about 1 year ago
Updated: 9 months ago
Last pushed: 9 months ago
Last synced: 9 months ago
Files
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Dependencies
.github/workflows/backport.yml
actions
- tibdex/backport v1 composite
.github/workflows/pkgdown.yaml
actions
- actions/checkout v3 composite
- r-lib/actions/setup-pandoc v1 composite
- r-lib/actions/setup-r v2 composite
- actions/cache v3 composite
- actions/checkout v3 composite
- actions/setup-python v4 composite
- codecov/codecov-action v3 composite
- maxim-lobanov/setup-xcode v1 composite
- JasonEtco/create-an-issue v2 composite
- actions/checkout v3 composite
- actions/checkout v2 composite
- actions/download-artifact v3 composite
- actions/setup-python v4 composite
- actions/upload-artifact v3 composite
- pypa/cibuildwheel v2.11.3 composite
- pypa/gh-action-pypi-publish release/v1 composite
.github/workflows/r-ci.yml
actions
- actions/checkout v3 composite
- lukka/get-cmake latest composite
- actions/checkout v3 composite
- actions/setup-python v4 composite
- lukka/get-cmake latest composite
- actions/checkout v3 composite
apis/r/DESCRIPTION
cran
- R >= 4.0.0 depends
- Matrix * imports
- R6 * imports
- Rcpp * imports
- arrow * imports
- bit64 * imports
- data.table * imports
- fs * imports
- glue * imports
- methods * imports
- rlang * imports
- spdl * imports
- stats * imports
- tiledb >= 0.21.0 imports
- tools * imports
- urltools * imports
- utils * imports
- S4Vectors * suggests
- SeuratObject >= 4.1.0 suggests
- SingleCellExperiment >= 1.20.0 suggests
- SummarizedExperiment >= 1.28.0 suggests
- datasets * suggests
- knitr * suggests
- pbmc3k.sce * suggests
- pbmc3k.tiledb * suggests
- rmarkdown * suggests
- testthat >= 3.0.0 suggests
- withr * suggests
- cmake >=3.21 development
- pybind11-global >=2.10.0 development
- pytest * development
- typeguard <3.0 development
apis/python/setup.py
pypi
- cmake >=3.21
- docutils <0.18
- jinja2 ==3.0.0
- nbsphinx *
- pybind11 >=2.10.0
- setuptools >=18.0,<=59.5.0
- setuptools_scm >=1.5.4
- sphinx ==4.5.0
- sphinx-rtd-theme ==1.0.0
- wheel >=0.30
profiler/setup.py
pypi