Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub / TRON-Bioinformatics / splice2neo

R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TRON-Bioinformatics%2Fsplice2neo

Stars: 10
Forks: 1
Open Issues: 0

License: other
Language: R
Repo Size: 11.1 MB
Dependencies: 40

Created: over 2 years ago
Updated: about 2 months ago
Last pushed: about 2 months ago
Last synced: about 2 months ago

Files

Loading...

Readme

Loading...

Dependencies

DESCRIPTION cran

R >= 2.10 depends
BSgenome.Hsapiens.UCSC.hg19 * imports
BiocGenerics * imports
Biostrings * imports
GenomeInfoDb * imports
GenomicFeatures >= 1.21.10 imports
GenomicRanges * imports
IRanges * imports
S4Vectors * imports
XVector * imports
dplyr * imports
furrr * imports
ggbio * imports
magrittr * imports
purrr * imports
readr * imports
rlang * imports
rtracklayer * imports
stringr * imports
tibble * imports
tidyr * imports
vcfR * imports
covr * suggests
knitr * suggests
spelling * suggests
testthat >= 3.0.0 suggests

.github/workflows/R-CMD-check.yaml actions

actions/checkout v2 composite
actions/checkout v3 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/pkgdown.yaml actions

JamesIves/github-pages-deploy-action v4.4.1 composite
actions/checkout v3 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/test-coverage.yaml actions

actions/checkout v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite