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GitHub / ZJUFanLab / bulk2space
a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ZJUFanLab%2Fbulk2space
Stars: 94
Forks: 20
Open Issues: 8
License: gpl-3.0
Language: Jupyter Notebook
Repo Size: 12.1 MB
Dependencies:
9
Created: over 2 years ago
Updated: 3 months ago
Last pushed: about 1 year ago
Last synced: 3 months ago
Topics: bulk-sequencing, deep-learning, scrna-seq, spatial-transcriptomics
Files
Dependencies
- Unidecode ==1.3.0
- deep-forest ==0.1.5
- easydict ==1.9
- numpy ==1.19.2
- pandas ==1.1.3
- scanpy ==1.8.1
- scikit-learn ==1.0.1
- scipy ==1.5.2
- tqdm ==4.50.2