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GitHub / alexklibisz / deep-calcium
Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/alexklibisz%2Fdeep-calcium
Stars: 27
Forks: 10
Open Issues: 18
License: None
Language: Python
Repo Size: 96.6 MB
Dependencies:
78
Created: almost 7 years ago
Updated: over 1 year ago
Last pushed: over 1 year ago
Last synced: about 1 year ago
Topics: calcium-imaging, deep-learning, neurofinder, unet
Files
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Dependencies
requirements.txt
pypi
- Jinja2 ==2.9.6
- Keras ==2.0.6
- Markdown ==2.6.8
- MarkupSafe ==1.0
- Pillow ==4.2.1
- PyWavelets ==0.5.2
- PyYAML ==3.12
- Pygments ==2.2.0
- Theano ==0.9.0
- Werkzeug ==0.12.2
- backports-abc ==0.5
- backports.shutil-get-terminal-size ==1.0.0
- backports.ssl-match-hostname ==3.5.0.1
- backports.weakref ==1.0rc1
- bleach ==1.5.0
- certifi ==2017.4.17
- chardet ==3.0.4
- click ==6.7
- configparser ==3.5.0
- cycler ==0.10.0
- decorator ==4.1.2
- entrypoints ==0.2.3
- enum34 ==1.1.6
- funcsigs ==1.0.2
- h5py ==2.7.0
- html5lib ==0.9999999
- idna ==2.5
- ipykernel ==4.6.1
- ipython ==5.4.1
- ipython-genutils ==0.2.0
- ipywidgets ==6.0.0
- jsonschema ==2.6.0
- jupyter ==1.0.0
- jupyter-client ==5.1.0
- jupyter-console ==5.1.0
- jupyter-core ==4.3.0
- matplotlib ==2.0.2
- mistune ==0.7.4
- mock ==2.0.0
- nbconvert ==5.2.1
- nbformat ==4.3.0
- networkx ==1.11
- neurofinder ==1.1.1
- notebook ==5.0.0
- numpy ==1.13.1
- olefile ==0.44
- pandas ==0.20.3
- pandocfilters ==1.4.1
- pathlib2 ==2.3.0
- pbr ==3.1.1
- pexpect ==4.2.1
- pickleshare ==0.7.4
- prompt-toolkit ==1.0.14
- protobuf ==3.3.0
- ptyprocess ==0.5.2
- pyparsing ==2.2.0
- python-dateutil ==2.6.1
- pytz ==2017.2
- pyzmq ==16.0.2
- qtconsole ==4.3.0
- regional ==1.1.2
- requests ==2.18.2
- scikit-image ==0.13.0
- scipy ==0.19.1
- simplegeneric ==0.8.1
- singledispatch ==3.4.0.3
- six ==1.10.0
- sk-video ==1.1.8
- tensorflow-gpu ==1.2.1
- terminado ==0.6
- testpath ==0.3.1
- tifffile ==0.12.1
- tornado ==4.5.1
- tqdm ==4.15.0
- traitlets ==4.3.2
- urllib3 ==1.22
- wcwidth ==0.1.7
- widgetsnbextension ==2.0.0