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GitHub / aquariumbio / aquarium

The Aquarium Lab Operating System

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aquariumbio%2Faquarium

Stars: 57
Forks: 15
Open Issues: 269

License: mit
Language: Ruby
Repo Size: 33.1 MB
Dependencies: 249

Created: almost 11 years ago
Updated: about 1 month ago
Last pushed: 8 days ago
Last synced: 8 days ago

Topics: biology, lab, lims, molecular, protocols

Files

Readme

Dependencies

docker-compose.yml docker

minio/mc RELEASE.2020-11-25T23-04-07Z
minio/minio edge
mysql 5.7
nginx stable-alpine

package.json npm

@bower_components/ace-builds ajaxorg/ace-builds#*
@bower_components/angular angular/bower-angular#1.7.7
@bower_components/angular-animate angular/bower-angular-animate#1.4 - 1.7.0 || ^1.7.2
@bower_components/angular-aria angular/bower-angular-aria#1.4 - 1.7.0 || ^1.7.2
@bower_components/angular-cookies angular/bower-angular-cookies#*
@bower_components/angular-material angular/bower-material#~1.1.3
@bower_components/angular-material-icons klarsys/angular-material-icons#*
@bower_components/angular-messages angular/bower-angular-messages#1.4 - 1.7.0 || ^1.7.2
@bower_components/angular-resource angular/bower-angular-resource#*
@bower_components/blueimp-canvas-to-blob blueimp/JavaScript-Canvas-to-Blob#>=2.1.1
@bower_components/blueimp-load-image blueimp/JavaScript-Load-Image#>=1.13.0
@bower_components/blueimp-tmpl blueimp/JavaScript-Templates#>=2.5.4
@bower_components/bootstrap-css jozefizso/bower-bootstrap-css#2.3.2
@bower_components/datatables.net DataTables/Dist-DataTables#*
@bower_components/github-markdown-css sindresorhus/github-markdown-css#*
@bower_components/jquery jquery/jquery-dist#>=1.6
@bower_components/jquery-autocomplete trendalytics/bower-jquery-autocomplete#*
@bower_components/jquery-cookie carhartl/jquery-cookie#*
@bower_components/jquery-file-upload blueimp/jQuery-File-Upload#*
@bower_components/jquery-ui components/jqueryui#*
@bower_components/jquery-ujs rails/jquery-ujs#*
@bower_components/lodash lodash/lodash#*
@bower_components/markdown-it markdown-it/markdown-it#*
@bower_components/should shouldjs/should.js#*
@bower_components/underscore jashkenas/underscore#*

ui/package.json npm

cypress ^3.1.0 development

docker-compose.selenium.yml docker

selenium/standalone-chrome-debug latest

components/aquadoc/lib/assets/bower.json bower

bootstrap latest
github-markdown-css latest
highlight latest
jquery latest
markdown-it latest

Gemfile rubygems

factory_bot_rails >= 5.2.0 development
ipaddress >= 0 development
rspec-rails >= 4.1.2 development
rspec-sorbet >= 0 development
rubocop >= 0 development
rubocop-rails >= 0 development
rubocop-sorbet >= 0 development
simplecov >= 0 development
sorbet >= 0 development
web-console ~> 3.3, >= 3.3.0 development
yard >= 0.9.20 development
yard-activerecord >= 0 development
activerecord-import >= 0
activerecord-nulldb-adapter >= 0
alphabetical_paginate >= 0
anemone >= 0
angular_rails_csrf = 2.1.1
aquadoc >= 0
aws-sdk >= 1.67.0, < 2.0
aws-sdk-s3 >= 0
aws-sdk-ses >= 0
bcrypt ~> 3.1
closure-compiler >= 0
mimemagic >= 0.3.10
mysql2 ~> 0.5.2
oj >= 0
paperclip ~> 6.1, >= 6.1.0
protected_attributes_continued >= 0
puma >= 0
rack-cors ~> 1.0.5
rails = 4.2.11.3
redcarpet >= 3.5.1
ruby-units >= 0
sassc-rails >= 2.1.2
sorbet-rails = 0.5.6
sorbet-runtime >= 0
tzinfo-data >= 0
where-or >= 0
will_paginate >= 0

components/anemone/Gemfile rubygems

minitest >= 0
test-unit >= 0

components/anemone/anemone.gemspec rubygems

sqlite3 >= 0 development
rails = 4.2.11.3

components/aquadoc/aquadoc.gemspec rubygems

octokit ~> 4.15
yard ~> 0.9.20

Dockerfile docker

aquarium-development latest build
ruby ${RUBY_VERSION}-alpine${ALPINE_VERSION} build

components/aquadoc/env/Dockerfile docker

ubuntu 20 build

docker-compose.override.yml docker

aquarium-development latest

docker-compose.production.yml docker

aquariumbio/aquarium ${AQUARIUM_VERSION}

yarn.lock npm

@bower_components/ace-builds 1.4.12
@bower_components/angular 1.7.7
@bower_components/angular-animate 1.8.2
@bower_components/angular-aria 1.8.2
@bower_components/angular-cookies 1.8.2
@bower_components/angular-material 1.1.26
@bower_components/angular-material-icons 0.7.1
@bower_components/angular-messages 1.8.2
@bower_components/angular-resource 1.8.2
@bower_components/blueimp-canvas-to-blob 3.28.0
@bower_components/blueimp-load-image 5.14.0
@bower_components/blueimp-tmpl 3.19.0
@bower_components/bootstrap-css 0.0.0
@bower_components/datatables.net 1.10.25
@bower_components/github-markdown-css 4.0.0
@bower_components/jquery 3.6.0
@bower_components/jquery-autocomplete 0.0.0
@bower_components/jquery-cookie 1.4.1
@bower_components/jquery-file-upload 10.31.0
@bower_components/jquery-ui 1.12.1
@bower_components/jquery-ujs 1.2.3
@bower_components/lodash 4.17.21
@bower_components/markdown-it 12.1.0
@bower_components/should 13.2.3
@bower_components/underscore 1.13.1
angular 1.8.2
argparse 2.0.1
blueimp-canvas-to-blob 3.28.0
blueimp-load-image 5.14.0
blueimp-tmpl 3.19.0
entities 2.1.0
jquery 3.6.0
linkify-it 3.0.2
mdurl 1.0.1
should-equal 2.0.0
should-format 3.0.3
should-type 1.4.0
should-type-adaptors 1.1.0
should-util 1.0.1
uc.micro 1.0.6

Gemfile.lock rubygems

123 dependencies