Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub / arnor-sigurdsson / EIR
A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/arnor-sigurdsson%2FEIR
Stars: 23
Forks: 4
Open Issues: 0
License: agpl-3.0
Language: Python
Repo Size: 82.2 MB
Dependencies:
587
Created: almost 3 years ago
Updated: 28 days ago
Last pushed: about 1 month ago
Last synced: about 1 month ago
Commit Stats
Commits: 1118
Authors: 2
Mean commits per author: 559.0
Development Distribution Score: 0.004
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/arnor-sigurdsson/EIR
Topics: deep-learning, machine-learning, python
Files
Loading...
Readme
Loading...
Dependencies
setup.py
pypi
- sphinx ==4.0.2
- sphinx-copybutton ==0.3.3
pyproject.toml
pypi
- Sphinx ^5.0.2 develop
- black ^22.1.0 develop
- coverage ^6.0.2 develop
- flake8 ^4.0.1 develop
- gdown ^4.2.1 develop
- gpustat ^0.6.0 develop
- ipykernel ^6.4.2 develop
- jupyter ^1.0.0 develop
- pdf2image ^1.16.0 develop
- pre-commit ^2.7.1 develop
- pyinstaller ^5.1 develop
- pynvim ^0.4.2 develop
- pytest ^7.0.0 develop
- pytest-cov ^3.0.0 develop
- snakeviz ^2.1.0 develop
- sphinx-copybutton ^0.5.0 develop
- sphinx-rtd-theme ^1.0.0 develop
- tomlkit ^0.11.1 develop
- tox ^3.20.1 develop
- visidata ^2.0.1 develop
- ConfigArgParse ^1.2.3
- adabelief-pytorch ^0.2.0
- aislib ^0.1.7-alpha.0
- colorama ^0.4.4
- dill ^0.3.3
- hypothesis ^6.14.0
- ipython ^8.4.0
- joblib ^1.1.0
- matplotlib 3.4.3
- numpy ^1.19.2
- pandas ^1.2.0
- perceiver-pytorch ^0.8.1
- plotly ^5.3.1
- py ^1.9.0
- python >= 3.8,< 3.10
- pytorch-ignite ^0.4.7
- scikit-learn ^1.0
- seaborn ^0.11.1
- sentencepiece ^0.1.96
- shap ^0.41.0
- sympy ^1.6.2
- tensorboard ^2.3.0
- timm ^0.5.4
- torch ^1.12.0
- torch-optimizer ^0.3.0
- torchtext ^0.13.0
- torchvision ^0.13.0
- tqdm ^4.55.0
- transformers ^4.11.3
requirements-dev.txt
pypi
- absl-py ==1.1.0
- adabelief-pytorch ==0.2.1
- aislib ==0.1.7a0
- alabaster ==0.7.12
- altgraph ==0.17.2
- appnope ==0.1.3
- argon2-cffi ==21.3.0
- argon2-cffi-bindings ==21.2.0
- asttokens ==2.0.5
- atomicwrites ==1.4.0
- attrs ==21.4.0
- babel ==2.10.3
- backcall ==0.2.0
- beautifulsoup4 ==4.11.1
- black ==22.6.0
- bleach ==5.0.1
- blessings ==1.7
- cachetools ==5.2.0
- certifi ==2022.6.15
- cffi ==1.15.1
- cfgv ==3.3.1
- charset-normalizer ==2.1.0
- click ==8.1.3
- cloudpickle ==2.1.0
- colorama ==0.4.5
- configargparse ==1.5.3
- coverage ==6.4.1
- cycler ==0.11.0
- dask ==2022.6.1
- debugpy ==1.6.1
- decorator ==5.1.1
- defusedxml ==0.7.1
- deprecated ==1.2.13
- dill ==0.3.5.1
- distlib ==0.3.4
- docutils ==0.17.1
- einops ==0.4.1
- entrypoints ==0.4
- exceptiongroup ==1.0.0rc8
- executing ==0.8.3
- fastjsonschema ==2.15.3
- filelock ==3.7.1
- flake8 ==4.0.1
- fsspec ==2022.5.0
- future ==0.18.2
- gdown ==4.5.1
- google-auth ==2.9.0
- google-auth-oauthlib ==0.4.6
- gpustat ==0.6.0
- greenlet ==1.1.2
- grpcio ==1.47.0
- huggingface-hub ==0.8.1
- hypothesis ==6.49.1
- identify ==2.5.1
- idna ==3.3
- imagesize ==1.4.1
- importlib-metadata ==4.12.0
- importlib-resources ==5.8.0
- iniconfig ==1.1.1
- ipykernel ==6.15.0
- ipython ==8.4.0
- ipython-genutils ==0.2.0
- ipywidgets ==7.7.1
- jedi ==0.18.1
- jinja2 ==3.1.2
- joblib ==1.1.0
- jsonschema ==4.6.1
- jupyter ==1.0.0
- jupyter-client ==7.3.4
- jupyter-console ==6.4.4
- jupyter-core ==4.10.0
- jupyterlab-pygments ==0.2.2
- jupyterlab-widgets ==1.1.1
- kiwisolver ==1.4.3
- llvmlite ==0.36.0
- locket ==1.0.0
- macholib ==1.16
- markdown ==3.3.7
- markupsafe ==2.1.1
- matplotlib ==3.4.3
- matplotlib-inline ==0.1.3
- mccabe ==0.6.1
- mistune ==0.8.4
- mpmath ==1.2.1
- msgpack ==1.0.4
- mypy-extensions ==0.4.3
- nbclient ==0.6.6
- nbconvert ==6.5.0
- nbformat ==5.4.0
- nest-asyncio ==1.5.5
- nodeenv ==1.7.0
- notebook ==6.4.12
- numba ==0.53.1
- numpy ==1.23.0
- nvidia-ml-py3 ==7.352.0
- oauthlib ==3.2.0
- packaging ==21.3
- pandas ==1.4.3
- pandas-plink ==2.2.9
- pandocfilters ==1.5.0
- parso ==0.8.3
- partd ==1.2.0
- pathspec ==0.9.0
- pdf2image ==1.16.0
- pefile ==2022.5.30
- perceiver-pytorch ==0.8.3
- pexpect ==4.8.0
- pickleshare ==0.7.5
- pillow ==9.2.0
- platformdirs ==2.5.2
- plotly ==5.9.0
- pluggy ==1.0.0
- pre-commit ==2.19.0
- prometheus-client ==0.14.1
- prompt-toolkit ==3.0.30
- protobuf ==3.19.4
- psutil ==5.9.1
- ptyprocess ==0.7.0
- pure-eval ==0.2.2
- py ==1.11.0
- pyasn1 ==0.4.8
- pyasn1-modules ==0.2.8
- pycodestyle ==2.8.0
- pycparser ==2.21
- pyflakes ==2.4.0
- pygments ==2.12.0
- pyinstaller ==5.1
- pyinstaller-hooks-contrib ==2022.7
- pynvim ==0.4.3
- pyparsing ==3.0.9
- pyrsistent ==0.18.1
- pysocks ==1.7.1
- pytest ==7.1.2
- pytest-cov ==3.0.0
- python-dateutil ==2.8.2
- pytorch-ignite ==0.4.9
- pytorch-ranger ==0.1.1
- pytz ==2022.1
- pywin32 ==304
- pywin32-ctypes ==0.2.0
- pywinpty ==2.0.6
- pyyaml ==6.0
- pyzmq ==23.2.0
- qtconsole ==5.3.1
- qtpy ==2.1.0
- regex ==2022.6.2
- requests ==2.28.1
- requests-oauthlib ==1.3.1
- rsa ==4.8
- scikit-learn ==1.1.1
- scipy ==1.8.1
- seaborn ==0.11.2
- send2trash ==1.8.0
- sentencepiece ==0.1.96
- shap ==0.41.0
- six ==1.16.0
- slicer ==0.0.7
- snakeviz ==2.1.1
- snowballstemmer ==2.2.0
- sortedcontainers ==2.4.0
- soupsieve ==2.3.2.post1
- sphinx ==5.0.2
- sphinx-copybutton ==0.5.0
- sphinx-rtd-theme ==1.0.0
- sphinxcontrib-applehelp ==1.0.2
- sphinxcontrib-devhelp ==1.0.2
- sphinxcontrib-htmlhelp ==2.0.0
- sphinxcontrib-jsmath ==1.0.1
- sphinxcontrib-qthelp ==1.0.3
- sphinxcontrib-serializinghtml ==1.1.5
- stack-data ==0.3.0
- sympy ==1.10.1
- tabulate ==0.8.10
- tenacity ==8.0.1
- tensorboard ==2.9.1
- tensorboard-data-server ==0.6.1
- tensorboard-plugin-wit ==1.8.1
- terminado ==0.15.0
- threadpoolctl ==3.1.0
- timm ==0.5.4
- tinycss2 ==1.1.1
- tokenizers ==0.12.1
- toml ==0.10.2
- tomli ==2.0.1
- tomlkit ==0.11.1
- toolz ==0.11.2
- torch ==1.12.0
- torch-optimizer ==0.3.0
- torchtext ==0.13.0
- torchvision ==0.13.0
- tornado ==6.2
- tox ==3.25.1
- tqdm ==4.64.0
- traitlets ==5.3.0
- transformers ==4.20.1
- typing-extensions ==4.3.0
- urllib3 ==1.26.9
- virtualenv ==20.15.1
- visidata ==2.8
- wcwidth ==0.2.5
- webencodings ==0.5.1
- werkzeug ==2.1.2
- widgetsnbextension ==3.6.1
- wrapt ==1.14.1
- xarray ==2022.3.0
- zipp ==3.8.0
- zstandard ==0.18.0
requirements.txt
pypi
- absl-py ==1.1.0
- adabelief-pytorch ==0.2.1
- aislib ==0.1.7a0
- appnope ==0.1.3
- asttokens ==2.0.5
- atomicwrites ==1.4.0
- attrs ==21.4.0
- backcall ==0.2.0
- cachetools ==5.2.0
- certifi ==2022.6.15
- cffi ==1.15.1
- charset-normalizer ==2.1.0
- cloudpickle ==2.1.0
- colorama ==0.4.5
- configargparse ==1.5.3
- cycler ==0.11.0
- dask ==2022.6.1
- decorator ==5.1.1
- deprecated ==1.2.13
- dill ==0.3.5.1
- einops ==0.4.1
- exceptiongroup ==1.0.0rc8
- executing ==0.8.3
- filelock ==3.7.1
- fsspec ==2022.5.0
- google-auth ==2.9.0
- google-auth-oauthlib ==0.4.6
- grpcio ==1.47.0
- huggingface-hub ==0.8.1
- hypothesis ==6.49.1
- idna ==3.3
- importlib-metadata ==4.12.0
- iniconfig ==1.1.1
- ipython ==8.4.0
- jedi ==0.18.1
- joblib ==1.1.0
- kiwisolver ==1.4.3
- llvmlite ==0.36.0
- locket ==1.0.0
- markdown ==3.3.7
- matplotlib ==3.4.3
- matplotlib-inline ==0.1.3
- mpmath ==1.2.1
- numba ==0.53.1
- numpy ==1.23.0
- oauthlib ==3.2.0
- packaging ==21.3
- pandas ==1.4.3
- pandas-plink ==2.2.9
- parso ==0.8.3
- partd ==1.2.0
- perceiver-pytorch ==0.8.3
- pexpect ==4.8.0
- pickleshare ==0.7.5
- pillow ==9.2.0
- plotly ==5.9.0
- pluggy ==1.0.0
- prompt-toolkit ==3.0.30
- protobuf ==3.19.4
- ptyprocess ==0.7.0
- pure-eval ==0.2.2
- py ==1.11.0
- pyasn1 ==0.4.8
- pyasn1-modules ==0.2.8
- pycparser ==2.21
- pygments ==2.12.0
- pyparsing ==3.0.9
- pytest ==7.1.2
- python-dateutil ==2.8.2
- pytorch-ignite ==0.4.9
- pytorch-ranger ==0.1.1
- pytz ==2022.1
- pyyaml ==6.0
- regex ==2022.6.2
- requests ==2.28.1
- requests-oauthlib ==1.3.1
- rsa ==4.8
- scikit-learn ==1.1.1
- scipy ==1.8.1
- seaborn ==0.11.2
- sentencepiece ==0.1.96
- shap ==0.41.0
- six ==1.16.0
- slicer ==0.0.7
- sortedcontainers ==2.4.0
- stack-data ==0.3.0
- sympy ==1.10.1
- tabulate ==0.8.10
- tenacity ==8.0.1
- tensorboard ==2.9.1
- tensorboard-data-server ==0.6.1
- tensorboard-plugin-wit ==1.8.1
- threadpoolctl ==3.1.0
- timm ==0.5.4
- tokenizers ==0.12.1
- tomli ==2.0.1
- toolz ==0.11.2
- torch ==1.12.0
- torch-optimizer ==0.3.0
- torchtext ==0.13.0
- torchvision ==0.13.0
- tqdm ==4.64.0
- traitlets ==5.3.0
- transformers ==4.20.1
- typing-extensions ==4.3.0
- urllib3 ==1.26.9
- wcwidth ==0.2.5
- werkzeug ==2.1.2
- wrapt ==1.14.1
- xarray ==2022.3.0
- zipp ==3.8.0
- zstandard ==0.18.0
.github/workflows/coverage.yml
actions
- actions/checkout v3 composite
- actions/setup-python v4 composite
- codecov/codecov-action v3 composite
- release-drafter/release-drafter v5.6.1 composite
.github/workflows/release.yml
actions
- actions/checkout v3 composite
- actions/setup-python v4 composite
- softprops/action-gh-release v1 composite
.github/workflows/test.yml
actions
- actions/checkout v3 composite
- actions/setup-python v4 composite
Dockerfile
docker
- nvcr.io/nvidia/pytorch 22.05-py3 build