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GitHub / bharris12 / multiscale_brain
Scripts and some small datafiles for "Multiscale Co-expression in the Brain"
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bharris12%2Fmultiscale_brain
Stars: 3
Forks: 0
Open Issues: 14
License: None
Language: Jupyter Notebook
Repo Size: 7.72 MB
Dependencies:
197
Created: about 4 years ago
Updated: over 2 years ago
Last pushed: over 1 year ago
Last synced: about 1 year ago
Files
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Readme
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Dependencies
- Bottleneck ==1.3.1
- Click ==7.0
- HeapDict ==1.0.1
- Jinja2 ==2.11.3
- MarkupSafe ==1.1.1
- Pillow ==8.3.2
- PySocks ==1.6.8
- PyWavelets ==1.1.1
- PyYAML ==5.1.2
- Pygments ==2.4.2
- Send2Trash ==1.5.0
- UpSetPlot ==0.3.0.post3
- anndata ==0.6.22.post1
- aplus ==0.11.0
- appdirs ==1.4.3
- asn1crypto ==0.24.0
- astropy ==4.0
- attrs ==19.3.0
- backcall ==0.1.0
- black ==19.10b0
- bleach ==3.3.0
- bokeh ==1.3.4
- boto3 ==1.10.48
- botocore ==1.13.48
- bqplot ==0.12.2
- branca ==0.3.1
- cachetools ==3.1.1
- catheat ==0.2.0
- certifi ==2019.11.28
- cffi ==1.11.5
- chardet ==3.0.4
- cloudpickle ==1.2.2
- colorama ==0.4.1
- conda ==4.7.12
- conda-package-handling ==1.6.0
- cryptography ==3.2
- cycler ==0.10.0
- cytoolz ==0.10.0
- dask ==2.6.0
- decorator ==4.4.0
- defusedxml ==0.6.0
- distributed ==2.6.0
- docutils ==0.15.2
- dynamicTreeCut ==0.1.0
- entrypoints ==0.3
- feather-format ==0.4.0
- fsspec ==0.5.2
- future ==0.18.2
- get-version ==2.1
- gprofiler-official ==1.0.0
- h5py ==2.9.0
- hypothesis ==5.1.1
- idna ==2.8
- imageio ==2.6.1
- importlib-metadata ==0.23
- ipydatawidgets ==4.0.1
- ipykernel ==5.1.2
- ipyleaflet ==0.11.6
- ipympl ==0.2.1
- ipyscales ==0.3.0
- ipython ==7.8.0
- ipython-genutils ==0.2.0
- ipyvolume ==0.5.2
- ipyvue ==1.0.2
- ipyvuetify ==1.1.1
- ipywebrtc ==0.5.0
- ipywidgets ==7.5.1
- itermplot ==0.331
- jedi ==0.15.1
- jmespath ==0.9.4
- joblib ==0.14.0
- joypy ==0.2.1
- json5 ==0.8.5
- jsonschema ==3.1.1
- jupyter ==1.0.0
- jupyter-client ==5.3.4
- jupyter-console ==6.0.0
- jupyter-contrib-core ==0.3.3
- jupyter-contrib-nbextensions ==0.5.1
- jupyter-core ==4.6.0
- jupyter-highlight-selected-word ==0.2.0
- jupyter-latex-envs ==1.4.4
- jupyter-nbextensions-configurator ==0.4.1
- jupyterlab ==1.2.21
- jupyterlab-code-formatter ==1.0.3
- jupyterlab-server ==1.0.6
- kiwisolver ==1.1.0
- legacy-api-wrap ==1.2
- llvmlite ==0.30.0
- locket ==0.2.0
- loompy ==3.0.6
- lxml ==4.6.2
- matplotlib ==3.0.3
- matplotlib-venn ==0.11.5
- mistune ==0.8.4
- mkl-fft ==1.0.14
- mkl-random ==1.1.0
- mkl-service ==2.3.0
- mock ==3.0.5
- more-itertools ==7.2.0
- msgpack ==0.6.1
- mypy-extensions ==0.4.3
- natsort ==6.0.0
- nbconvert ==5.6.0
- nbformat ==4.4.0
- nbresuse ==0.3.2
- networkx ==2.4
- notebook ==6.4.1
- numba ==0.46.0
- numexpr ==2.7.0
- numpy ==1.17.2
- numpy-groupies ==0
- olefile ==0.46
- packaging ==19.2
- pandas ==0.25.2
- pandocfilters ==1.4.2
- parso ==0.5.1
- partd ==1.0.0
- pathspec ==0.7.0
- patsy ==0.5.1
- pexpect ==4.7.0
- pickleshare ==0.7.5
- pluggy ==0.12.0
- progressbar2 ==3.47.0
- prometheus-client ==0.7.1
- prompt-toolkit ==2.0.10
- psutil ==5.6.6
- ptyprocess ==0.6.0
- py ==1.10.0
- pyOpenSSL ==18.0.0
- pyarrow ==0.11.1
- pycosat ==0.6.3
- pycparser ==2.19
- pyparsing ==2.4.2
- pyrsistent ==0.15.4
- pytest ==5.3.2
- pytest-arraydiff ==0.3
- pytest-astropy ==0.7.0
- pytest-astropy-header ==0.1.2
- pytest-doctestplus ==0.4.0
- pytest-openfiles ==0.4.0
- pytest-remotedata ==0.3.1
- pytest-runner ==5.2
- python-dateutil ==2.8.0
- python-http-client ==3.1.0
- python-louvain ==0.13
- python-utils ==2.3.0
- pythreejs ==2.1.1
- pytz ==2019.3
- pyzmq ==18.1.0
- qtconsole ==4.5.5
- regex ==2020.1.8
- requests ==2.21.0
- ruamel-yaml ==0.15.46
- s3fs ==0.2.2
- s3transfer ==0.2.1
- scanpy ==1.4.5.post1
- scikit-image ==0.15.0
- scikit-learn ==0.21.3
- scipy ==1.3.1
- seaborn ==0.9.0
- setuptools-scm ==3.3.3
- six ==1.12.0
- sortedcontainers ==2.1.0
- statsmodels ==0.10.1
- tables ==3.5.2
- tabulate ==0.8.6
- tanglegram ==0.1.0
- tblib ==1.4.0
- terminado ==0.8.2
- testpath ==0.4.2
- toml ==0.10.0
- toolz ==0.10.0
- tornado ==6.0.3
- tqdm ==4.36.1
- traitlets ==4.3.3
- traittypes ==0.2.1
- typed-ast ==1.4.0
- typing-extensions ==3.7.4.1
- umap-learn ==0.3.10
- urllib3 ==1.26.5
- vaex-arrow ==0.4.2
- vaex-astro ==0.6.1
- vaex-core ==1.4.0
- vaex-hdf5 ==0.5.6
- vaex-jupyter ==0.4.1
- vaex-ml ==0.7.0
- vaex-server ==0.2.1
- vaex-viz ==0.3.8
- wcwidth ==0.1.7
- webencodings ==0.5.1
- widgetsnbextension ==3.5.1
- xarray ==0.14.1
- xlrd ==1.2.0
- yapf ==0.28.0
- zict ==1.0.0
- zipp ==0.6.0