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GitHub / campbio / scruff
Single Cell RNA-seq UMI Filtering Facilitator
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/campbio%2Fscruff
Stars: 8
Forks: 9
Open Issues: 0
License: other
Language: R
Repo Size: 31.3 MB
Dependencies:
29
Created: over 6 years ago
Updated: 10 months ago
Last pushed: 2 months ago
Last synced: about 1 month ago
Topics: bioinformatics, scrna-seq, single-cell, umi
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Dependencies
DESCRIPTION
cran
- R >= 4.0 depends
- AnnotationDbi * imports
- BiocGenerics * imports
- BiocParallel * imports
- Biostrings * imports
- GenomeInfoDb * imports
- GenomicAlignments * imports
- GenomicFeatures * imports
- GenomicRanges * imports
- Rsamtools * imports
- Rsubread * imports
- S4Vectors * imports
- ShortRead * imports
- SingleCellExperiment * imports
- SummarizedExperiment * imports
- data.table * imports
- ggbio * imports
- ggplot2 * imports
- ggthemes * imports
- methods * imports
- parallel * imports
- plyr * imports
- rtracklayer * imports
- scales * imports
- stringdist * imports
- BiocStyle * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests