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GitHub / charles-plessy / CAGEr
Mirror of Bioconductor's CAGEr package repository
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/charles-plessy%2FCAGEr
Stars: 6
Forks: 4
Open Issues: 47
License: None
Language: HTML
Repo Size: 7.15 MB
Dependencies:
43
Created: over 6 years ago
Updated: 2 days ago
Last pushed: 2 days ago
Last synced: 1 day ago
Commit Stats
Commits: 876
Authors: 18
Mean commits per author: 48.67
Development Distribution Score: 0.381
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/charles-plessy/CAGEr
Topics: bioconductor, cage, r, transcriptome
Files
Dependencies
- MultiAssayExperiment * depends
- R >= 4.1.0 depends
- methods * depends
- BSgenome * imports
- BiocGenerics * imports
- BiocParallel * imports
- DelayedArray * imports
- DelayedMatrixStats * imports
- GenomeInfoDb * imports
- GenomicAlignments * imports
- GenomicRanges >= 1.37.16 imports
- IRanges >= 2.18.0 imports
- KernSmooth * imports
- Rsamtools * imports
- S4Vectors >= 0.27.5 imports
- SummarizedExperiment * imports
- VGAM * imports
- data.table * imports
- formula.tools * imports
- ggplot2 >= 2.2.0 imports
- gtools * imports
- memoise * imports
- plyr * imports
- reshape2 * imports
- rtracklayer * imports
- som * imports
- stringdist * imports
- stringi * imports
- utils * imports
- vegan * imports
- BSgenome.Drerio.UCSC.danRer7 * suggests
- BiocStyle * suggests
- DESeq2 * suggests
- FANTOM3and4CAGE * suggests
- knitr * suggests
- rmarkdown * suggests
- JamesIves/github-pages-deploy-action releases/v4 composite
- actions/cache v3 composite
- actions/checkout v3 composite
- actions/upload-artifact master composite
- docker/build-push-action v1 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite