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GitHub / connorhknight / IBRAP
single-cell RNA-sequencing integrative, benchmarking tool.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/connorhknight%2FIBRAP
Stars: 3
Forks: 5
Open Issues: 1
License: None
Language: HTML
Repo Size: 327 MB
Dependencies:
35
Created: over 3 years ago
Updated: about 1 year ago
Last pushed: about 1 year ago
Last synced: about 1 year ago
Files
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Readme
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Dependencies
DESCRIPTION
cran
- R >= 4.0.0 depends
- MAST >= 1.16.0 imports
- Matrix >= 1.3 imports
- PCAtools >= 2.2.0 imports
- ProjectionBasedClustering >= 1.1.6 imports
- RColorBrewer >= 1.1 imports
- SC3 >= 1.18.0 imports
- Seurat >= 4.0.3 imports
- SingleCellExperiment >= 1.12.0 imports
- SingleR >= 1.4.1 imports
- aricode >= 1.0.0 imports
- biomaRt >= 2.46.3 imports
- clValid >= 0.7 imports
- cluster >= 2.1.2 imports
- colorspace >= 2.0 imports
- cowplot >= 1.1.1 imports
- crayon >= 1.4.1 imports
- egg >= 0.4.5 imports
- ggplot2 >= 2.2.0 imports
- ggpubr >= 0.4.0 imports
- ggrepel >= 0.9.1 imports
- harmony >= 0.1.0 imports
- mclust >= 5.4.7 imports
- plotly >= 4.9.4.1 imports
- progress >= 1.2.2 imports
- reticulate >= 1.20 imports
- scran >= 1.18.7 imports
- scuttle >= 1.0.4 imports
- shiny >= 1.7.1 imports
- slingshot >= 1.8.0 imports
- stringr >= 1.40.0 imports
- topGO >= 2.42.0 imports
- usethis >= 2.1.3 imports
- utils >= 4.0.4 imports
- uwot >= 0.1.10 imports