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GitHub / de-Boer-Lab / random-promoter-dream-challenge-2022
Stars: 9
Forks: 0
Open Issues: 0
License: mit
Language: Python
Repo Size: 152 MB
Dependencies:
426
Created: 4 months ago
Updated: 3 months ago
Last pushed: 2 months ago
Last synced: 2 months ago
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Dependencies
- datasets >=1.1.3
- protobuf *
- sentencepiece *
- sklearn *
- black >=20.8b1
- cookiecutter ==1.7.2
- dataclasses *
- datasets *
- faiss-cpu *
- fastapi *
- filelock *
- flake8 >=3.8.3
- flax >=0.2.2
- fugashi >=1.0
- importlib_metadata *
- ipadic <2.0,>=1.0.0
- isort >=5.5.4
- jax >=0.2.8
- jaxlib >=0.1.59
- keras2onnx *
- numpy >=1.17
- onnxconverter-common *
- onnxruntime >=1.4.0
- onnxruntime-tools >=1.4.2
- packaging *
- parameterized *
- protobuf *
- psutil *
- pydantic *
- pytest *
- pytest-xdist *
- recommonmark *
- regex *
- requests *
- sacremoses *
- scikit-learn *
- sentencepiece ==0.1.91
- soundfile *
- sphinx ==3.2.1
- sphinx-copybutton *
- sphinx-markdown-tables *
- sphinx-rtd-theme ==0.4.3
- starlette *
- tensorflow >=2.3
- tensorflow-cpu >=2.3
- timeout-decorator *
- tokenizers ==0.10.1rc1
- torch >=1.0
- tqdm >=4.27
- unidic >=1.0.2
- unidic_lite >=1.0.7
- uvicorn *
- einops *
- numpy *
- pandas *
- scikit-learn *
- scipy *
- torch ==1.12.0
- tqdm *
- x_transformers ==0.28.4
- matplotlib ==3.5.2
- matplotlib-inline ==0.1.3
- pandas ==1.4.3
- tensorflow-addons ==0.16.1
- tqdm ==4.64.0
environment.yml
conda
- _libgcc_mutex 0.1
- _openmp_mutex 5.1
- anyio 4.2.0
- argon2-cffi 21.3.0
- argon2-cffi-bindings 21.2.0
- asttokens 2.0.5
- async-lru 2.0.4
- attrs 23.1.0
- babel 2.11.0
- beautifulsoup4 4.12.2
- blas 1.0
- bleach 4.1.0
- bottleneck 1.3.7
- brotli-python 1.0.9
- bzip2 1.0.8
- ca-certificates 2023.12.12
- certifi 2024.2.2
- cffi 1.16.0
- charset-normalizer 2.0.4
- comm 0.1.2
- cuda 11.6.1
- cuda-cccl 11.6.55
- cuda-command-line-tools 11.6.2
- cuda-compiler 11.6.2
- cuda-cudart 11.6.55
- cuda-cudart-dev 11.6.55
- cuda-cuobjdump 11.6.124
- cuda-cupti 11.6.124
- cuda-cuxxfilt 11.6.124
- cuda-driver-dev 11.6.55
- cuda-gdb 12.3.101
- cuda-libraries 11.6.1
- cuda-libraries-dev 11.6.1
- cuda-memcheck 11.8.86
- cuda-nsight 12.3.101
- cuda-nsight-compute 12.3.2
- cuda-nvcc 11.6.124
- cuda-nvdisasm 12.3.101
- cuda-nvml-dev 11.6.55
- cuda-nvprof 12.3.101
- cuda-nvprune 11.6.124
- cuda-nvrtc 11.6.124
- cuda-nvrtc-dev 11.6.124
- cuda-nvtx 11.6.124
- cuda-nvvp 12.3.101
- cuda-runtime 11.6.1
- cuda-samples 11.6.101
- cuda-sanitizer-api 12.3.101
- cuda-toolkit 11.6.1
- cuda-tools 11.6.1
- cuda-visual-tools 11.6.1
- debugpy 1.6.7
- decorator 5.1.1
- defusedxml 0.7.1
- exceptiongroup 1.2.0
- executing 0.8.3
- gds-tools 1.8.1.2
- idna 3.4
- intel-openmp 2023.1.0
- ipykernel 6.28.0
- ipython 8.20.0
- jedi 0.18.1
- jinja2 3.1.3
- joblib 1.2.0
- json5 0.9.6
- jsonschema 4.19.2
- jsonschema-specifications 2023.7.1
- jupyter-lsp 2.2.0
- jupyter_client 8.6.0
- jupyter_core 5.5.0
- jupyter_events 0.8.0
- jupyter_server 2.10.0
- jupyter_server_terminals 0.4.4
- jupyterlab 4.0.11
- jupyterlab_pygments 0.1.2
- jupyterlab_server 2.25.1
- ld_impl_linux-64 2.38
- libcublas 11.9.2.110
- libcublas-dev 11.9.2.110
- libcufft 10.7.1.112
- libcufft-dev 10.7.1.112
- libcufile 1.8.1.2
- libcufile-dev 1.8.1.2
- libcurand 10.3.4.107
- libcurand-dev 10.3.4.107
- libcusolver 11.3.4.124
- libcusparse 11.7.2.124
- libcusparse-dev 11.7.2.124
- libffi 3.4.4
- libgcc-ng 11.2.0
- libgfortran-ng 11.2.0
- libgfortran5 11.2.0
- libgomp 11.2.0
- libnpp 11.6.3.124
- libnpp-dev 11.6.3.124
- libnvjpeg 11.6.2.124
- libnvjpeg-dev 11.6.2.124
- libsodium 1.0.18
- libstdcxx-ng 11.2.0
- libuuid 1.41.5
- markupsafe 2.1.3
- matplotlib-inline 0.1.6
- mistune 2.0.4
- mkl 2023.1.0
- mkl-service 2.4.0
- mkl_fft 1.3.8
- mkl_random 1.2.4
- nbclient 0.8.0
- nbconvert 7.10.0
- nbformat 5.9.2
- ncurses 6.4
- nest-asyncio 1.5.6
- notebook-shim 0.2.3
- nsight-compute 2023.3.1.1
- numexpr 2.8.7
- numpy 1.26.3
- numpy-base 1.26.3
- openssl 3.0.13
- overrides 7.4.0
- packaging 23.1
- pandas 2.1.4
- pandocfilters 1.5.0
- parso 0.8.3
- pexpect 4.8.0
- pip 23.3.1
- platformdirs 3.10.0
- pooch 1.7.0
- prometheus_client 0.14.1
- prompt-toolkit 3.0.43
- prompt_toolkit 3.0.43
- psutil 5.9.0
- ptyprocess 0.7.0
- pure_eval 0.2.2
- pycparser 2.21
- pygments 2.15.1
- pysocks 1.7.1
- python 3.10.13
- python-dateutil 2.8.2
- python-fastjsonschema 2.16.2
- python-json-logger 2.0.7
- python-tzdata 2023.3
- pytorch 1.13.1
- pytorch-cuda 11.6
- pytorch-mutex 1.0
- pytz 2023.3.post1
- pyyaml 6.0.1
- pyzmq 25.1.2
- readline 8.2
- referencing 0.30.2
- requests 2.31.0
- rfc3339-validator 0.1.4
- rfc3986-validator 0.1.1
- rpds-py 0.10.6
- scikit-learn 1.2.1
- scipy 1.10.1
- send2trash 1.8.2
- setuptools 68.2.2
- six 1.16.0
- sniffio 1.3.0
- soupsieve 2.5
- sqlite 3.41.2
- stack_data 0.2.0
- tbb 2021.8.0
- terminado 0.17.1
- threadpoolctl 2.2.0
- tinycss2 1.2.1
- tk 8.6.12
- tomli 2.0.1
- tornado 6.3.3
- tqdm 4.65.0
- traitlets 5.7.1
- typing-extensions 4.9.0
- typing_extensions 4.9.0
- tzdata 2023d
- urllib3 2.1.0
- wcwidth 0.2.5
- webencodings 0.5.1
- websocket-client 0.58.0
- wheel 0.41.2
- xz 5.4.5
- yaml 0.2.5
- zeromq 4.3.5
- zlib 1.2.13
- absl-py ==1.0.0
- cachetools ==5.1.0
- charset-normalizer ==2.0.12
- cycler ==0.11.0
- dill ==0.3.5.1
- fonttools ==4.33.3
- google-auth ==2.6.6
- google-auth-oauthlib ==0.4.6
- grpcio ==1.46.3
- idna ==3.3
- importlib-metadata ==4.11.4
- kiwisolver ==1.4.2
- markdown ==3.3.7
- matplotlib ==3.5.2
- mmh3 ==3.0.0
- nose ==1.3.7
- numpy ==1.22.4
- oauthlib ==3.2.0
- pandas ==1.4.2
- pillow ==9.1.1
- pip ==22.2
- protobuf ==3.20.1
- pyasn1 ==0.4.8
- pyasn1-modules ==0.2.8
- pyparsing ==3.0.9
- pytorch-ignite ==0.4.9
- pytz ==2022.1
- requests ==2.27.1
- requests-oauthlib ==1.3.1
- rsa ==4.8
- scipy ==1.8.1
- seaborn ==0.11.2
- tensorboard ==2.9.0
- tensorboard-data-server ==0.6.1
- tensorboard-plugin-wit ==1.8.1
- tensorly ==0.7.0
- tensorly-torch ==0.3.0
- torch ==1.11.0
- torchaudio ==0.11.0
- torchvision ==0.12.0
- tqdm ==4.64.0
- typing-extensions ==4.2.0
- urllib3 ==1.26.9
- werkzeug ==2.1.2
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- absl-py ==1.0.0
- aiosignal ==1.2.0
- ansiwrap ==0.8.4
- argon2-cffi ==21.3.0
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- asttokens ==2.0.5
- astunparse ==1.6.3
- async-timeout ==4.0.2
- attrs ==21.4.0
- backcall ==0.2.0
- beautifulsoup4 ==4.11.1
- biopython ==1.79
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- blinker ==1.4
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- charset-normalizer ==2.0.12
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- decorator ==5.1.1
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- docker-pycreds ==0.4.0
- entrypoints ==0.4
- executing ==0.8.3
- fastjsonschema ==2.15.3
- flatbuffers ==2.0
- gast ==0.4.0
- gitdb ==4.0.9
- gitpython ==3.1.27
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- google-pasta ==0.2.0
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- matplotlib-inline ==0.1.3
- mistune ==0.8.4
- nbclient ==0.6.0
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- nbformat ==5.3.0
- nest-asyncio ==1.5.5
- notebook ==6.4.11
- oauthlib ==3.2.0
- opt-einsum ==3.3.0
- packaging ==21.3
- pandas ==1.4.2
- pandocfilters ==1.5.0
- papermill ==2.3.4
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- patsy ==0.5.2
- pexpect ==4.8.0
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- promise ==2.3
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- protein-bert ==1.0.1
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