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GitHub / dms-vep / dms-vep-pipeline
Pipeline for analyzing deep mutational scanning (DMS) of viral entry proteins (VEPs)
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dms-vep%2Fdms-vep-pipeline
Stars: 0
Forks: 0
Open Issues: 0
License: other
Language: Jupyter Notebook
Repo Size: 244 MB
Dependencies:
31
Created: about 2 years ago
Updated: about 1 month ago
Last pushed: 8 months ago
Last synced: about 1 month ago
Files
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Dependencies
environment.yml
conda
- biopython 1.80.*
- black-jupyter
- bs4 4.11.*
- entrez-direct 16.2.*
- flake8
- flake8-bugbear
- flake8-builtins
- flake8-comprehensions
- flake8-import-order
- flake8-nb
- git-lfs
- graphviz
- jupyterlab
- mafft 7.508.*
- mamba
- markdown 3.3.*
- matplotlib 3.6.*
- minimap2 2.24.*
- nbdime
- nbsphinx 0.8.*
- nbsphinx-link 1.3.*
- nbstripout
- openpyxl
- pandas 1.5.*
- papermill 2.3.*
- pip
- python 3.10.*
- snakefmt >=0.7
- snakemake 7.18.2.*
- sphinx 4.3.*
- upsetplot 0.7.*