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GitHub / fmalmeida / bacannot

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fmalmeida%2Fbacannot

Stars: 94
Forks: 9
Open Issues: 11

License: gpl-3.0
Language: Nextflow
Repo Size: 47.2 MB
Dependencies: 11

Created: over 4 years ago
Updated: 2 months ago
Last pushed: 2 months ago
Last synced: 28 days ago

Topics: annotation, antimicrobial-genes-annotation, barrnap, genome-analysis, genome-browser, genomic-islands-prediction, insertion-sequences, ko-annotation, methylation-annotation, mobile-genetic-elements, nextflow, phigaro, pipeline, prophage-sequences-prediction, prophages, reproducible-research, rgi, rrna-prediction, virulence-factor, virulence-genes

Files
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    Readme
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    Dependencies
    .github/workflows/build_kofamscan.yml actions
    .github/workflows/test_pr_docker.yml actions
    .github/workflows/test_pr_singularity.yml actions
    docker/jbrowse/Dockerfile docker
    docker/misc/Dockerfile docker
    docker/perlenv/Dockerfile docker
    docker/pyenv/Dockerfile docker
    docker/renv/Dockerfile docker
    docker/server/Dockerfile docker