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GitHub / genomic-medicine-sweden / gmsmetapost
GMS Metagenomics post-classification
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/genomic-medicine-sweden%2Fgmsmetapost
Stars: 0
Forks: 2
Open Issues: 15
License: mit
Language: Nextflow
Repo Size: 13.8 MB
Dependencies:
21
Created: almost 2 years ago
Updated: almost 2 years ago
Last pushed: over 1 year ago
Last synced: about 1 year ago
Files
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Readme
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Dependencies
.github/workflows/ci.yml
actions
- Wandalen/wretry.action v1.0.11 composite
- actions/checkout v2 composite
- nf-core/setup-nextflow v1 composite
- actions/checkout v3 composite
- docker/build-push-action v3 composite
- docker/login-action v2 composite
- docker/setup-buildx-action v2 composite
- docker/setup-qemu-action v2 composite
- biopython >=1.79
- blast 2.13.0.*
- pandas 1.4.3.*
- parallel 20220722.*
- python >=3.9
- r-base
- r-hrbrthemes >=0.8.0
- r-htmltools >=0.5.3
- r-plotly >=4.8.0
- r-tidyverse >=1.3.2
- taxonkit 0.12.0.*
conf/environments/Dockerfile
docker
- continuumio/miniconda3 4.12.0 build
- debian buster-slim build