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GitHub / getzlab / canine

A modular, high-performance computing solution to run jobs using SLURM

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/getzlab%2Fcanine

Stars: 6
Forks: 6
Open Issues: 19

License: bsd-3-clause
Language: Python
Repo Size: 1.41 MB
Dependencies: 18

Created: about 5 years ago
Updated: 7 months ago
Last pushed: 3 days ago
Last synced: 2 days ago

Topics: bioinformatics, high-performance-computing, slurm

Files

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Readme

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Dependencies

canine/test/requirements.txt pypi

timeout-decorator * test

setup.py pypi

PyYAML >=5.1
agutil >=4.1.0
docker >=4.1.0
firecloud-dalmatian >=0.0.17
google-api-python-client >=1.7.11
google-auth >=1.6.3
hound >=0.2.0
numpy >=1.18.0
pandas >=0.24.1
paramiko >=2.5.0
port-for >=0.4
psutil >=5.6.7
tables >=3.6.1

.github/workflows/CI.yml actions

actions/checkout v2 composite
actions/setup-python v2 composite
coverallsapp/github-action v1.1.2 composite

canine/backends/dummy/Dockerfile docker

gcr.io/broad-getzlab-workflows/slurm_gcp_docker_base latest build