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GitHub / gevaertlab / RNA-GAN

Synthetic whole-slide imaging tile generation with gene expression profiles infused deep generative models - Cell Reports Methods

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gevaertlab%2FRNA-GAN

Stars: 9
Forks: 0
Open Issues: 0

License: mit
Language: Python
Repo Size: 5.08 MB
Dependencies: 175

Created: about 2 years ago
Updated: 8 months ago
Last pushed: 8 months ago
Last synced: 8 months ago

Files

Readme

Dependencies

requirements.txt pypi

GitPython ==3.1.27
Jinja2 ==3.0.3
Markdown ==3.3.6
MarkupSafe ==2.0.1
Pillow ==9.0.0
Pillow-SIMD ==7.0.0.post3
PyWavelets ==1.2.0
PyYAML ==6.0
Pygments ==2.10.0
QtPy ==1.11.2
Send2Trash ==1.8.0
Werkzeug ==2.0.2
absl-py ==1.0.0
accelerate ==0.10.0
argcomplete ==2.0.0
argon2-cffi ==21.1.0
astor ==0.8.1
attrs ==21.2.0
autograd ==1.3
autograd-gamma ==0.5.0
backcall ==0.2.0
bitsandbytes-cuda111 ==0.26.0
bleach ==4.1.0
cachetools ==4.2.4
certifi ==2021.10.8
cffi ==1.15.0
charset-normalizer ==2.0.7
click ==8.1.3
cycler ==0.11.0
debugpy ==1.5.1
decorator ==5.1.0
deepspeed ==0.6.5
defusedxml ==0.7.1
distlib ==0.3.4
docker-pycreds ==0.4.0
einops ==0.4.1
einops-exts ==0.0.3
entrypoints ==0.3
filelock ==3.6.0
fonttools ==4.28.2
formulaic ==0.3.2
future ==0.18.2
gitdb ==4.0.9
google-auth ==2.3.3
google-auth-oauthlib ==0.4.6
grad-cam ==1.3.7
grpcio ==1.42.0
h5py ==3.7.0
hjson ==3.0.2
huggingface-hub ==0.8.1
idna ==3.3
imageio ==2.14.1
imbalanced-learn ==0.9.0
importlib-metadata ==4.8.2
interface-meta ==1.2.4
ipykernel ==6.5.1
ipython ==7.29.0
ipython-genutils ==0.2.0
ipywidgets ==7.6.5
jedi ==0.18.1
joblib ==1.1.0
jpeg4py ==0.1.4
jsonschema ==4.2.1
jupyter ==1.0.0
jupyter-client ==7.1.0
jupyter-console ==6.4.0
jupyter-core ==4.9.1
jupyterlab-pygments ==0.1.2
jupyterlab-widgets ==1.0.2
kaggle ==1.5.12
kiwisolver ==1.3.2
kornia ==0.6.4
lifelines ==0.27.0
llvmlite ==0.37.0
lmdb ==1.3.0
matplotlib ==3.5.0
matplotlib-inline ==0.1.3
mistune ==0.8.4
mpi4py ==3.1.3
nbclient ==0.5.9
nbconvert ==6.3.0
nbformat ==5.1.3
nest-asyncio ==1.5.1
networkx ==2.6.3
ninja ==1.10.2.3
nonechucks ==0.4.2
notebook ==6.4.6
numba ==0.54.1
numpy ==1.20.3
oauthlib ==3.1.1
opencv-python ==4.5.4.58
openslide-python ==1.1.2
packaging ==21.3
pandas ==1.3.4
pandocfilters ==1.5.0
parso ==0.8.2
pathtools ==0.1.2
pexpect ==4.8.0
pickleshare ==0.7.5
pipx ==1.1.0
platformdirs ==2.5.2
prometheus-client ==0.12.0
promise ==2.3
prompt-toolkit ==3.0.22
protobuf ==3.19.0
psutil ==5.9.1
ptyprocess ==0.7.0
py-cpuinfo ==8.0.0
py-lz4framed ==0.14.0
pyarrow ==6.0.1
pyasn1 ==0.4.8
pyasn1-modules ==0.2.8
pycparser ==2.21
pylibjpeg-libjpeg ==1.2.0
pynndescent ==0.5.5
pyparsing ==3.0.6
pyrsistent ==0.18.0
python-dateutil ==2.8.2
python-slugify ==5.0.2
pytorch-ranger ==0.1.1
pytorch-warmup ==0.1.0
pytz ==2021.3
pyvips ==2.1.16
pyzmq ==22.3.0
qtconsole ==5.2.1
regex ==2022.7.9
requests ==2.26.0
requests-oauthlib ==1.3.0
resize-right ==0.0.2
rsa ==4.8
scikit-image ==0.19.1
scikit-learn ==1.0.1
scipy ==1.7.1
seaborn ==0.11.2
sentry-sdk ==1.5.12
setproctitle ==1.2.3
setuptools-scm ==6.3.2
shortuuid ==1.0.9
six ==1.16.0
smmap ==5.0.0
spacecutter ==0.2.0
tensorboard ==2.7.0
tensorboard-data-server ==0.6.1
tensorboard-plugin-wit ==1.8.0
tensorboardX ==2.4
terminado ==0.12.1
testpath ==0.5.0
text-unidecode ==1.3
threadpoolctl ==3.0.0
tifffile ==2021.11.2
tokenizers ==0.12.1
tomli ==1.2.2
torch ==1.10.1
torch-optimizer ==0.3.0
torch-tb-profiler ==0.3.1
torchgan ==0.1.0
torchvision ==0.11.2
tornado ==6.1
tqdm ==4.62.3
traitlets ==5.1.1
transformers ==4.20.1
ttach ==0.0.3
typing-extensions ==3.10.0.0
umap-learn ==0.5.2
urllib3 ==1.26.7
userpath ==1.8.0
virtualenv ==20.14.1
wandb ==0.12.18
warmup-scheduler ==0.3.2
wcwidth ==0.2.5
webencodings ==0.5.1
wget ==3.2
widgetsnbextension ==3.5.2
wrapt ==1.14.0
zipp ==3.6.0