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GitHub / glaParaBio / genomeAnnotationPipeline
You assembled a genome and now you want to annotate it with genes, proteins motifs etc.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/glaParaBio%2FgenomeAnnotationPipeline
Stars: 0
Forks: 0
Open Issues: 1
License: None
Language: Python
Repo Size: 5.36 MB
Dependencies:
52
Created: over 1 year ago
Updated: 12 months ago
Last pushed: 12 months ago
Last synced: 12 months ago
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Dependencies
requirements.txt
pypi
- agat =1.0.0
- bamtools >=2.5.1
- bamtools *
- biopython *
- blast >=2.2.31
- boost-cpp *
- cdbtools *
- cdbtools >=0.99
- diamond >=0.9.24
- diamond *
- exonerate >=2.2.0
- gemoma ==1.6.4
- genomethreader >=1.7.0
- gffutils *
- gsl *
- hmmer =3.3.2
- htslib *
- ipython *
- lp_solve *
- perl *
- perl-app-cpanminus *
- perl-class-data-inheritable *
- perl-dbi *
- perl-exception-class *
- perl-file-homedir *
- perl-file-spec *
- perl-file-which *
- perl-hash-merge *
- perl-list-moreutils *
- perl-logger-simple *
- perl-math-utils *
- perl-mce *
- perl-module-build *
- perl-module-load-conditional *
- perl-parallel-forkmanager *
- perl-posix *
- perl-scalar-list-utils *
- perl-scalar-util-numeric *
- perl-test-pod *
- perl-yaml *
- pigz *
- python >=3.3
- repeatmasker =4.1.2.p1
- samtools >=1.7
- snakemake >=7.15.2
- spaln >=2.3.3
- sqlite *
- suitesparse *
- tar *
- ucsc-fatotwobit *
- ucsc-twobitinfo *
- zlib *