Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: pypi: pigz
View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/pigz
Dependent Repos 24
WeiSong-bio/PocketChangeJ-chipseq_pipeline
- * requirements.txt
- * requirements_py3.txt
Size: 859 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
zhengzhanye/TF_chipseq_pipeline
- * requirements.txt
- * requirements_py3.txt
Size: 170 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
nickdeveaux/Defaults
Developer defaults- * apt_requirements.txt
Size: 523 KB - Last synced: about 1 year ago - Pushed: almost 6 years ago
kundajelab/chipseq_pipeline
AQUAS TF and histone ChIP-seq pipeline- * requirements.txt
- * requirements_py3.txt
Size: 1.51 MB - Last synced: 5 days ago - Pushed: almost 2 years ago
giovannipapini/dotfiles
- * brew/homebrew-requirements.txt
Size: 99.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
nicwulab/SARS-CoV-2_in_vitro_adaptation
- =2.4=ha441bb4_0 requirements.txt
Size: 1.64 MB - Last synced: 9 months ago - Pushed: almost 3 years ago
kundajelab/chip-nexus-pipeline
ChIP-nexus pipeline- * conda/requirements.txt
Size: 1.16 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
broadinstitute/cms2-work
Gather in one place various repos and files related to CMS2.0 work.- * conda-envs/requirements-conda.reqs.txt
Size: 508 MB - Last synced: 10 months ago - Pushed: 10 months ago
yue4u/dotfiles
- * requirements/pkglist.txt
Size: 160 KB - Last synced: 10 months ago - Pushed: 10 months ago
broadinstitute/viral-ngs
Viral genomics analysis pipelines- =2.4 requirements-conda.txt
- =2.4 requirements-minimal.txt
Size: 64.5 MB - Last synced: 7 months ago - Pushed: over 3 years ago
mikemadden42/pyutils
Utility scripts- * required_pkgs.txt
Size: 1 MB - Last synced: 7 days ago - Pushed: 7 days ago
lisiang/GREPore-seq
- * requirements.txt
Size: 56.1 MB - Last synced: about 1 year ago - Pushed: about 2 years ago
gilesc/BioTK
Bioinformatics toolkit for handling large matrices, expression analysis, and more -- CLI plus C++ and Python libraries- * binary-requirements.txt
Size: 2.38 MB - Last synced: about 1 year ago - Pushed: about 9 years ago
kundajelab/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline- * requirements.txt
- * requirements_py3.txt
Size: 13.8 MB - Last synced: 5 days ago - Pushed: almost 2 years ago
pegi3s/dockerfiles
This repository contains Docker files for the images maintained by the Phenotypic Evolution Group at the Institute for Molecular and Cell Biology / Instituto de Investigação e Inovação em Saúde da Universidade do Porto.- * bioconvert/0.4.3/resources/requirements_tools.txt
Size: 37.8 MB - Last synced: 1 day ago - Pushed: 2 days ago
broadinstitute/viral-core
viral-ngs: read QC, barcode metrics, spike-in metrics, Illumina metrics and demux- =2.4 requirements-conda.txt
Size: 60.3 MB - Last synced: 20 days ago - Pushed: 21 days ago
biomystery/atacseq_pipeline
- * requirements.txt
- * requirements_py3.txt
Size: 14.6 MB - Last synced: over 1 year ago
Glaciohound/Chimera-ST
A PyTorch implementation of paper "Learning Shared Semantic Space for Speech-to-Text Translation", ACL (Findings) 2021- * requirements-apt.txt
Size: 18.7 MB - Last synced: about 1 year ago - Pushed: about 2 years ago
gonzalosm98/scRNA-SeqAnalysis
- =2.6=h27826a3_0 requirements.txt
Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
4dn-dcic/chip-seq-pipeline2 Fork of ENCODE-DCC/chip-seq-pipeline2
4DN chip-seq pipeline, inherited from ENCODE chip-seq pipeline- * conda/requirements.txt
Size: 135 MB - Last synced: 4 months ago - Pushed: over 1 year ago
winni2k/kannan_et_al_2019
RNA-seq analysis for Kannan et al. 2019- * requirements.txt
Size: 34 MB - Last synced: about 1 year ago - Pushed: about 5 years ago
epigen-UCSD/chipseq_pipeline
- * requirements.txt
- * requirements_py3.txt
Size: 30.4 MB - Last synced: 10 months ago - Pushed: over 4 years ago
epigen-UCSD/atac_seq_pipeline
- * requirements.txt
- * requirements_py3.txt
Size: 464 KB - Last synced: 10 months ago - Pushed: about 3 years ago
glaParaBio/genomeAnnotationPipeline
You assembled a genome and now you want to annotate it with genes, proteins motifs etc.- * requirements.txt
Size: 5.36 MB - Last synced: 11 months ago - Pushed: 11 months ago
broadinstitute/cms2
CMS 2.0- =2.4 requirements-conda.txt
- =2.4 requirements-minimal.txt
Size: 107 MB - Last synced: about 1 year ago - Pushed: about 4 years ago
eddykay310/demeter
provides pseudogene prediction tools (prokka, DFAST and pseudofinder) and post prediction pan-genome analysis of pseudogenes- =2.6=h27826a3_0 requirements/base_requirements.txt
Size: 149 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
duceppemo/GBS_stacks
A pipeline to process Genotyping-by-Sequencing (GBS) data from Illimina or IonTorrent using stacks to call the genotypes and variants.- =2.6=h27cfd23_0 requirements.txt
Size: 209 KB - Last synced: about 1 year ago - Pushed: about 2 years ago
kundajelab/bds_pipeline_modules
BigDataScript (BDS) pipelines and modules- * requirements.txt
- * requirements_py3.txt
Size: 218 KB - Last synced: 7 months ago - Pushed: about 7 years ago
EDataScriptware/SeniorProjectDevelopment 📦
- * deployment/requirements.txt
Size: 8.15 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
hyeonwoocho7/ASL-Detection-Kaggle
This is My Silver Medal solution in Google - Isolated Sign Language Recognition Kaggle competition🥈- * apt-requirements.txt
Size: 716 KB - Last synced: 10 months ago - Pushed: 10 months ago
GenomicsNX/atac_dnase_pipelines Fork of kundajelab/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline- * requirements.txt
- * requirements_py3.txt
Size: 13.7 MB - Last synced: about 1 month ago - Pushed: almost 7 years ago
GenomicsNX/TF_chipseq_pipeline Fork of kundajelab/chipseq_pipeline
AQUAS TF ChIP-seq pipeline- * requirements.txt
- * requirements_py3.txt
Size: 1.12 MB - Last synced: about 1 month ago - Pushed: over 7 years ago
sudarshangc/viral-ngs Fork of broadinstitute/viral-ngs
Viral genomics analysis pipelines- =2.4 requirements-conda.txt
- =2.4 requirements-minimal.txt
Size: 60.1 MB - Last synced: 10 months ago - Pushed: over 4 years ago
benayang/chipseq_pipeline Fork of kundajelab/chipseq_pipeline
AQUAS TF and histone ChIP-seq pipeline- * requirements.txt
- * requirements_py3.txt
Size: 1.51 MB - Last synced: 10 months ago - Pushed: over 4 years ago
dereckmezquita/dockerfiles Fork of pegi3s/dockerfiles
This repository contains Docker files for the images maintained by the Phenotypic Evolution Group at the Institute for Molecular and Cell Biology / Instituto de Investigação e Inovação em Saúde da Universidade do Porto.- * bioconvert/0.4.3/resources/requirements_tools.txt
Size: 8.43 MB - Last synced: 10 months ago - Pushed: almost 2 years ago
FunctionalGeneControl/chip-seq-pipeline2 Fork of ENCODE-DCC/chip-seq-pipeline2
- * conda/requirements.txt
Size: 134 MB - Last synced: 9 months ago - Pushed: over 5 years ago
FunctionalGeneControl/atac-seq-pipeline Fork of ENCODE-DCC/atac-seq-pipeline
ENCODE ATAC-seq pipeline- * conda/requirements.txt
Size: 152 MB - Last synced: 9 months ago - Pushed: over 5 years ago
novapyth/viral-ngs Fork of broadinstitute/viral-ngs
Viral genomics analysis pipelines- =2.4 requirements-conda.txt
- =2.4 requirements-minimal.txt
Size: 64.5 MB - Last synced: 9 months ago - Pushed: almost 4 years ago
maximillo/atac_dnase_pipelines Fork of kundajelab/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline- * requirements.txt
- * requirements_py3.txt
Size: 13.7 MB - Last synced: 9 months ago - Pushed: over 6 years ago
JING-XINXING/bioconvert Fork of bioconvert/bioconvert
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.- * requirements_tools.txt
Size: 11.7 MB - Last synced: 8 months ago - Pushed: about 4 years ago
zhang-jiankun/atac-seq-pipeline Fork of da-bar/atac-seq-pipeline
ENCODE ATAC-seq pipeline- * conda/requirements.txt
Size: 158 MB - Last synced: 8 months ago - Pushed: over 4 years ago
adamtongji/atac_dnase_pipelines Fork of kundajelab/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline- * requirements.txt
- * requirements_py3.txt
Size: 13.6 MB - Last synced: 8 months ago - Pushed: about 7 years ago
pcmin03/ASLFinger
- * apt-requirements.txt
Size: 9.77 KB - Last synced: 4 months ago - Pushed: 4 months ago
HCGB-IGTP/XICRA
Small RNAseq pipeline for paired-end reads- =2.6=h27cfd23_0 XICRA_pip/devel/conda/old/requirements_fresh.txt
Size: 33.2 MB - Last synced: 13 days ago - Pushed: 3 months ago
LorienLV/genarchbench
Genomics benchmark suite targeting the Arm architecture. Public/mirror repository of GenArchBench (https://gitlab.bsc.es/Lorien/genarchbench).- ==4.4 benchmarks/nn-variant/requirements.txt
Size: 95 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
APRashedAhmed/dotfiles
Repo for Managing Various Linux dotfiles- * requirements.txt
Size: 1.74 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
Franky1/microbiome
Streamlit app forked for debugging purposes- ==2.6 requirements.txt
Size: 2.77 MB - Last synced: 29 days ago - Pushed: about 1 year ago