Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: pypi: pigz

View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/pigz

Dependent Repos 24

WeiSong-bio/PocketChangeJ-chipseq_pipeline
  • * requirements.txt
  • * requirements_py3.txt

Size: 859 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

zhengzhanye/TF_chipseq_pipeline
  • * requirements.txt
  • * requirements_py3.txt

Size: 170 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

nickdeveaux/Defaults
Developer defaults
  • * apt_requirements.txt

Size: 523 KB - Last synced: about 1 year ago - Pushed: almost 6 years ago

kundajelab/chipseq_pipeline
AQUAS TF and histone ChIP-seq pipeline
  • * requirements.txt
  • * requirements_py3.txt

Size: 1.51 MB - Last synced: 5 days ago - Pushed: almost 2 years ago

giovannipapini/dotfiles
  • * brew/homebrew-requirements.txt

Size: 99.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

nicwulab/SARS-CoV-2_in_vitro_adaptation
  • =2.4=ha441bb4_0 requirements.txt

Size: 1.64 MB - Last synced: 9 months ago - Pushed: almost 3 years ago

kundajelab/chip-nexus-pipeline
ChIP-nexus pipeline
  • * conda/requirements.txt

Size: 1.16 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

broadinstitute/cms2-work
Gather in one place various repos and files related to CMS2.0 work.
  • * conda-envs/requirements-conda.reqs.txt

Size: 508 MB - Last synced: 10 months ago - Pushed: 10 months ago

yue4u/dotfiles
  • * requirements/pkglist.txt

Size: 160 KB - Last synced: 10 months ago - Pushed: 10 months ago

broadinstitute/viral-ngs
Viral genomics analysis pipelines
  • =2.4 requirements-conda.txt
  • =2.4 requirements-minimal.txt

Size: 64.5 MB - Last synced: 7 months ago - Pushed: over 3 years ago

med-team/bioconvert
bioconvert packaging
  • * requirements_tools.txt

Last synced: over 1 year ago

mikemadden42/pyutils
Utility scripts
  • * required_pkgs.txt

Size: 1 MB - Last synced: 7 days ago - Pushed: 7 days ago

lisiang/GREPore-seq
  • * requirements.txt

Size: 56.1 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

gilesc/BioTK
Bioinformatics toolkit for handling large matrices, expression analysis, and more -- CLI plus C++ and Python libraries
  • * binary-requirements.txt

Size: 2.38 MB - Last synced: about 1 year ago - Pushed: about 9 years ago

kundajelab/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
  • * requirements.txt
  • * requirements_py3.txt

Size: 13.8 MB - Last synced: 5 days ago - Pushed: almost 2 years ago

pegi3s/dockerfiles
This repository contains Docker files for the images maintained by the Phenotypic Evolution Group at the Institute for Molecular and Cell Biology / Instituto de Investigação e Inovação em Saúde da Universidade do Porto.
  • * bioconvert/0.4.3/resources/requirements_tools.txt

Size: 37.8 MB - Last synced: 1 day ago - Pushed: 2 days ago

broadinstitute/viral-core
viral-ngs: read QC, barcode metrics, spike-in metrics, Illumina metrics and demux
  • =2.4 requirements-conda.txt

Size: 60.3 MB - Last synced: 20 days ago - Pushed: 21 days ago

biomystery/atacseq_pipeline
  • * requirements.txt
  • * requirements_py3.txt

Size: 14.6 MB - Last synced: over 1 year ago

Philbrick/rilcontour
  • * requirements.txt

Last synced: over 1 year ago

wrenlab/biotk
  • * binary-requirements.txt

Size: 24.8 MB - Last synced: over 1 year ago

Glaciohound/Chimera-ST
A PyTorch implementation of paper "Learning Shared Semantic Space for Speech-to-Text Translation", ACL (Findings) 2021
  • * requirements-apt.txt

Size: 18.7 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

gonzalosm98/scRNA-SeqAnalysis
  • =2.6=h27826a3_0 requirements.txt

Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

4dn-dcic/chip-seq-pipeline2 Fork of ENCODE-DCC/chip-seq-pipeline2
4DN chip-seq pipeline, inherited from ENCODE chip-seq pipeline
  • * conda/requirements.txt

Size: 135 MB - Last synced: 4 months ago - Pushed: over 1 year ago

winni2k/kannan_et_al_2019
RNA-seq analysis for Kannan et al. 2019
  • * requirements.txt

Size: 34 MB - Last synced: about 1 year ago - Pushed: about 5 years ago

epigen-UCSD/chipseq_pipeline
  • * requirements.txt
  • * requirements_py3.txt

Size: 30.4 MB - Last synced: 10 months ago - Pushed: over 4 years ago

epigen-UCSD/atac_seq_pipeline
  • * requirements.txt
  • * requirements_py3.txt

Size: 464 KB - Last synced: 10 months ago - Pushed: about 3 years ago

glaParaBio/genomeAnnotationPipeline
You assembled a genome and now you want to annotate it with genes, proteins motifs etc.
  • * requirements.txt

Size: 5.36 MB - Last synced: 11 months ago - Pushed: 11 months ago

broadinstitute/cms2
CMS 2.0
  • =2.4 requirements-conda.txt
  • =2.4 requirements-minimal.txt

Size: 107 MB - Last synced: about 1 year ago - Pushed: about 4 years ago

eddykay310/demeter
provides pseudogene prediction tools (prokka, DFAST and pseudofinder) and post prediction pan-genome analysis of pseudogenes
  • =2.6=h27826a3_0 requirements/base_requirements.txt

Size: 149 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

duceppemo/GBS_stacks
A pipeline to process Genotyping-by-Sequencing (GBS) data from Illimina or IonTorrent using stacks to call the genotypes and variants.
  • =2.6=h27cfd23_0 requirements.txt

Size: 209 KB - Last synced: about 1 year ago - Pushed: about 2 years ago

kundajelab/bds_pipeline_modules
BigDataScript (BDS) pipelines and modules
  • * requirements.txt
  • * requirements_py3.txt

Size: 218 KB - Last synced: 7 months ago - Pushed: about 7 years ago

EDataScriptware/SeniorProjectDevelopment 📦
  • * deployment/requirements.txt

Size: 8.15 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

hyeonwoocho7/ASL-Detection-Kaggle
This is My Silver Medal solution in Google - Isolated Sign Language Recognition Kaggle competition🥈
  • * apt-requirements.txt

Size: 716 KB - Last synced: 10 months ago - Pushed: 10 months ago

GenomicsNX/atac_dnase_pipelines Fork of kundajelab/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
  • * requirements.txt
  • * requirements_py3.txt

Size: 13.7 MB - Last synced: about 1 month ago - Pushed: almost 7 years ago

GenomicsNX/TF_chipseq_pipeline Fork of kundajelab/chipseq_pipeline
AQUAS TF ChIP-seq pipeline
  • * requirements.txt
  • * requirements_py3.txt

Size: 1.12 MB - Last synced: about 1 month ago - Pushed: over 7 years ago

sudarshangc/viral-ngs Fork of broadinstitute/viral-ngs
Viral genomics analysis pipelines
  • =2.4 requirements-conda.txt
  • =2.4 requirements-minimal.txt

Size: 60.1 MB - Last synced: 10 months ago - Pushed: over 4 years ago

benayang/chipseq_pipeline Fork of kundajelab/chipseq_pipeline
AQUAS TF and histone ChIP-seq pipeline
  • * requirements.txt
  • * requirements_py3.txt

Size: 1.51 MB - Last synced: 10 months ago - Pushed: over 4 years ago

dereckmezquita/dockerfiles Fork of pegi3s/dockerfiles
This repository contains Docker files for the images maintained by the Phenotypic Evolution Group at the Institute for Molecular and Cell Biology / Instituto de Investigação e Inovação em Saúde da Universidade do Porto.
  • * bioconvert/0.4.3/resources/requirements_tools.txt

Size: 8.43 MB - Last synced: 10 months ago - Pushed: almost 2 years ago

FunctionalGeneControl/chip-seq-pipeline2 Fork of ENCODE-DCC/chip-seq-pipeline2
  • * conda/requirements.txt

Size: 134 MB - Last synced: 9 months ago - Pushed: over 5 years ago

FunctionalGeneControl/atac-seq-pipeline Fork of ENCODE-DCC/atac-seq-pipeline
ENCODE ATAC-seq pipeline
  • * conda/requirements.txt

Size: 152 MB - Last synced: 9 months ago - Pushed: over 5 years ago

novapyth/viral-ngs Fork of broadinstitute/viral-ngs
Viral genomics analysis pipelines
  • =2.4 requirements-conda.txt
  • =2.4 requirements-minimal.txt

Size: 64.5 MB - Last synced: 9 months ago - Pushed: almost 4 years ago

maximillo/atac_dnase_pipelines Fork of kundajelab/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
  • * requirements.txt
  • * requirements_py3.txt

Size: 13.7 MB - Last synced: 9 months ago - Pushed: over 6 years ago

JING-XINXING/bioconvert Fork of bioconvert/bioconvert
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  • * requirements_tools.txt

Size: 11.7 MB - Last synced: 8 months ago - Pushed: about 4 years ago

zhang-jiankun/atac-seq-pipeline Fork of da-bar/atac-seq-pipeline
ENCODE ATAC-seq pipeline
  • * conda/requirements.txt

Size: 158 MB - Last synced: 8 months ago - Pushed: over 4 years ago

adamtongji/atac_dnase_pipelines Fork of kundajelab/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
  • * requirements.txt
  • * requirements_py3.txt

Size: 13.6 MB - Last synced: 8 months ago - Pushed: about 7 years ago

pcmin03/ASLFinger
  • * apt-requirements.txt

Size: 9.77 KB - Last synced: 4 months ago - Pushed: 4 months ago

HCGB-IGTP/XICRA
Small RNAseq pipeline for paired-end reads
  • =2.6=h27cfd23_0 XICRA_pip/devel/conda/old/requirements_fresh.txt

Size: 33.2 MB - Last synced: 13 days ago - Pushed: 3 months ago

LorienLV/genarchbench
Genomics benchmark suite targeting the Arm architecture. Public/mirror repository of GenArchBench (https://gitlab.bsc.es/Lorien/genarchbench).
  • ==4.4 benchmarks/nn-variant/requirements.txt

Size: 95 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

APRashedAhmed/dotfiles
Repo for Managing Various Linux dotfiles
  • * requirements.txt

Size: 1.74 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

Franky1/microbiome
Streamlit app forked for debugging purposes
  • ==2.6 requirements.txt

Size: 2.77 MB - Last synced: 29 days ago - Pushed: about 1 year ago